ExtendedBidomainSolver.hpp

/*

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*/


#ifndef EXTENDEDBIDOMAINSOLVER_HPP_
#define EXTENDEDBIDOMAINSOLVER_HPP_


#include "UblasIncludes.hpp"

//#include <iostream>
#include <vector>
#include <petscvec.h>

#include "AbstractCardiacFeVolumeIntegralAssembler.hpp"
#include "AbstractExtendedBidomainSolver.hpp"
#include "HeartConfig.hpp"
#include "BidomainAssembler.hpp"
#include "BidomainMassMatrixAssembler.hpp"
#include "ExtendedBidomainNeumannSurfaceTermAssembler.hpp"

template<unsigned ELEM_DIM, unsigned SPACE_DIM>
class ExtendedBidomainSolver : public AbstractExtendedBidomainSolver<ELEM_DIM,SPACE_DIM>
{
private:
    Mat mMassMatrix;

    Vec mVecForConstructingRhs;

    ExtendedBidomainAssembler<ELEM_DIM,SPACE_DIM>* mpExtendedBidomainAssembler;

    ExtendedBidomainNeumannSurfaceTermAssembler<ELEM_DIM,SPACE_DIM>* mpExtendedBidomainNeumannSurfaceTermAssembler;


    void InitialiseForSolve(Vec initialSolution);

    void SetupLinearSystem(Vec currentSolution, bool computeMatrix);


public:
    ExtendedBidomainSolver(bool bathSimulation,
                              AbstractTetrahedralMesh<ELEM_DIM,SPACE_DIM>* pMesh,
                              ExtendedBidomainTissue<SPACE_DIM>* pTissue,
                              BoundaryConditionsContainer<ELEM_DIM,SPACE_DIM,3>* pBoundaryConditions);

    ~ExtendedBidomainSolver();
};


#endif /*EXTENDEDBIDOMAINSOLVER_HPP_*/