Chaste  Release::3.4
NobleVargheseKohlNoble1998WithSac.hpp
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35 
36 #ifndef _CML_noble_varghese_kohl_noble_1998_basic_with_sac_
37 #define _CML_noble_varghese_kohl_noble_1998_basic_with_sac_
38 
39 #include "ChasteSerialization.hpp"
40 #include <boost/serialization/base_object.hpp>
41 
42 #include <cmath>
43 #include <cassert>
44 #include "AbstractCardiacCell.hpp"
45 #include "Exception.hpp"
46 #include "AbstractStimulusFunction.hpp"
47 #include "OdeSystemInformation.hpp"
48 
49 
56 {
57  friend class boost::serialization::access;
63  template<class Archive>
64  void serialize(Archive & archive, const unsigned int version)
65  {
66  archive & mStretch;
67  archive & boost::serialization::base_object<AbstractCardiacCell>(*this);
68  }
69 private:
70 
72  double mStretch;
73 
74 public:
80  CML_noble_varghese_kohl_noble_1998_basic_with_sac(boost::shared_ptr<AbstractIvpOdeSolver> pSolver,
81  boost::shared_ptr<AbstractStimulusFunction> pIntracellularStimulus);
82 
85 
89  double GetIIonic(const std::vector<double>* pStateVariables=NULL);
90 
97  void EvaluateYDerivatives(double var_environment__time,
98  const std::vector<double> &rY,
99  std::vector<double> &rDY);
100 
105  void SetStretch(double stretch)
106  {
107  assert(stretch > 0.0);
108  mStretch = stretch;
109  }
110 
114  double GetStretch()
115  {
116  return mStretch;
117  }
118 
125  {
126  return mStateVariables[16];
127  }
128 };
129 
132 
133 namespace boost
134 {
135  namespace serialization
136  {
143  template<class Archive>
144  inline void save_construct_data(
145  Archive & ar, const CML_noble_varghese_kohl_noble_1998_basic_with_sac * t, const unsigned int fileVersion)
146  {
147  const boost::shared_ptr<AbstractIvpOdeSolver> p_solver = t->GetSolver();
148  const boost::shared_ptr<AbstractStimulusFunction> p_stimulus = t->GetStimulusFunction();
149  ar << p_solver;
150  ar << p_stimulus;
151  }
152 
159  template<class Archive>
160  inline void load_construct_data(
161  Archive & ar, CML_noble_varghese_kohl_noble_1998_basic_with_sac * t, const unsigned int fileVersion)
162  {
163  boost::shared_ptr<AbstractIvpOdeSolver> p_solver;
164  boost::shared_ptr<AbstractStimulusFunction> p_stimulus;
165  ar >> p_solver;
166  ar >> p_stimulus;
167  ::new(t)CML_noble_varghese_kohl_noble_1998_basic_with_sac(p_solver, p_stimulus);
168  }
169 
170  }
171 
172 }
173 
174 #endif
const boost::shared_ptr< AbstractIvpOdeSolver > GetSolver() const
void EvaluateYDerivatives(double var_environment__time, const std::vector< double > &rY, std::vector< double > &rDY)
void serialize(Archive &archive, const unsigned int version)
CML_noble_varghese_kohl_noble_1998_basic_with_sac(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)
boost::shared_ptr< AbstractStimulusFunction > GetStimulusFunction()
#define CHASTE_CLASS_EXPORT(T)
double GetIIonic(const std::vector< double > *pStateVariables=NULL)