Chaste  Release::3.4
NodeLocationWriter.cpp
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35 
36 #include "NodeLocationWriter.hpp"
37 #include "AbstractCellPopulation.hpp"
38 #include "MeshBasedCellPopulation.hpp"
39 #include "CaBasedCellPopulation.hpp"
40 #include "NodeBasedCellPopulation.hpp"
41 #include "PottsBasedCellPopulation.hpp"
42 #include "VertexBasedCellPopulation.hpp"
43 
44 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
46  : AbstractCellPopulationWriter<ELEMENT_DIM, SPACE_DIM>("results.viznodes")
47 {
48 }
49 
50 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
52 {
53  for (typename AbstractMesh<SPACE_DIM, SPACE_DIM>::NodeIterator node_iter = pCellPopulation->rGetMesh().GetNodeIteratorBegin();
54  node_iter != pCellPopulation->rGetMesh().GetNodeIteratorEnd();
55  ++node_iter)
56  {
57  if (!node_iter->IsDeleted())
58  {
59  const c_vector<double,SPACE_DIM>& position = node_iter->rGetLocation();
60 
61  for (unsigned i=0; i<SPACE_DIM; i++)
62  {
63  *this->mpOutStream << position[i] << " ";
64  }
65  }
66  }
67 }
68 
69 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
71 {
72  for (typename AbstractMesh<ELEMENT_DIM, SPACE_DIM>::NodeIterator node_iter = pCellPopulation->rGetMesh().GetNodeIteratorBegin();
73  node_iter != pCellPopulation->rGetMesh().GetNodeIteratorEnd();
74  ++node_iter)
75  {
76  if (!node_iter->IsDeleted())
77  {
78  const c_vector<double,SPACE_DIM>& position = node_iter->rGetLocation();
79 
80  for (unsigned i=0; i<SPACE_DIM; i++)
81  {
82  *this->mpOutStream << position[i] << " ";
83  }
84  }
85  }
86 }
87 
88 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
90 {
91  VisitAnyPopulation(pCellPopulation);
92 }
93 
94 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
96 {
97  VisitAnyPopulation(pCellPopulation);
98 }
99 
100 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
102 {
103  VisitAnyPopulation(pCellPopulation);
104 }
105 
106 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
108 {
109  VisitAnyPopulation(pCellPopulation);
110 }
111 
112 // Explicit instantiation
113 template class NodeLocationWriter<1,1>;
114 template class NodeLocationWriter<1,2>;
115 template class NodeLocationWriter<2,2>;
116 template class NodeLocationWriter<1,3>;
117 template class NodeLocationWriter<2,3>;
118 template class NodeLocationWriter<3,3>;
119 
121 // Declare identifier for the serializer
virtual void Visit(MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
MutableMesh< ELEMENT_DIM, SPACE_DIM > & rGetMesh()
void VisitAnyPopulation(AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *pCellPopulation)
#define EXPORT_TEMPLATE_CLASS_ALL_DIMS(CLASS)
AbstractMesh< ELEMENT_DIM, SPACE_DIM > & rGetMesh()