Chaste  Release::3.4
PdeAndBoundaryConditions.cpp
1 /*
2 
3 Copyright (c) 2005-2016, University of Oxford.
4 All rights reserved.
5 
6 University of Oxford means the Chancellor, Masters and Scholars of the
7 University of Oxford, having an administrative office at Wellington
8 Square, Oxford OX1 2JD, UK.
9 
10 This file is part of Chaste.
11 
12 Redistribution and use in source and binary forms, with or without
13 modification, are permitted provided that the following conditions are met:
14  * Redistributions of source code must retain the above copyright notice,
15  this list of conditions and the following disclaimer.
16  * Redistributions in binary form must reproduce the above copyright notice,
17  this list of conditions and the following disclaimer in the documentation
18  and/or other materials provided with the distribution.
19  * Neither the name of the University of Oxford nor the names of its
20  contributors may be used to endorse or promote products derived from this
21  software without specific prior written permission.
22 
23 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
26 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
27 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
28 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
29 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
30 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
31 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
32 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
33 
34 */
35 
36 #include "PdeAndBoundaryConditions.hpp"
37 
38 template<unsigned DIM>
40  AbstractBoundaryCondition<DIM>* pBoundaryCondition,
41  bool isNeumannBoundaryCondition,
42  Vec solution,
43  bool deleteMemberPointersInDestructor)
44  : mpPde(pPde),
45  mpBoundaryCondition(pBoundaryCondition),
46  mIsNeumannBoundaryCondition(isNeumannBoundaryCondition),
47  mSolution(NULL),
48  mDeleteMemberPointersInDestructor(deleteMemberPointersInDestructor),
49  mDependentVariableName("")
50 {
51  if (solution)
52  {
53  mSolution = solution;
54  }
55 }
56 
57 template<unsigned DIM>
59 {
60  // Avoid memory leaks if the object was loaded from an archive
61  if (mDeleteMemberPointersInDestructor)
62  {
63  delete mpPde;
64  delete mpBoundaryCondition;
65  }
66 
67  DestroySolution();
68 }
69 
70 template<unsigned DIM>
72 {
73  return mpPde;
74 }
75 
76 template<unsigned DIM>
78 {
79  return mpBoundaryCondition;
80 }
81 
82 template<unsigned DIM>
84 {
85  return mSolution;
86 }
87 
88 template<unsigned DIM>
90 {
91  return mSolution;
92 }
93 
94 template<unsigned DIM>
96 {
97  mSolution = solution;
98 }
99 
100 template<unsigned DIM>
102 {
103  return mIsNeumannBoundaryCondition;
104 }
105 
106 template<unsigned DIM>
108 {
109  return (dynamic_cast<AveragedSourcePde<DIM>*>(mpPde) != NULL);
110 }
111 
112 template<unsigned DIM>
114 {
115  if (mSolution)
116  {
117  PetscTools::Destroy(mSolution);
118  }
119 }
120 
121 template<unsigned DIM>
122 void PdeAndBoundaryConditions<DIM>::SetUpSourceTermsForAveragedSourcePde(TetrahedralMesh<DIM,DIM>* pMesh, std::map< CellPtr, unsigned >* pCellPdeElementMap)
123 {
124  assert(HasAveragedSourcePde());
125  static_cast<AveragedSourcePde<DIM>*>(mpPde)->SetupSourceTerms(*pMesh, pCellPdeElementMap);
126 }
127 
128 template<unsigned DIM>
130 {
131  mDependentVariableName = rName;
132 }
133 
134 template<unsigned DIM>
136 {
137  return mDependentVariableName;
138 }
140 template class PdeAndBoundaryConditions<1>;
141 template class PdeAndBoundaryConditions<2>;
142 template class PdeAndBoundaryConditions<3>;
143 
144 // Serialization for Boost >= 1.36
void SetDependentVariableName(const std::string &rName)
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
static void Destroy(Vec &rVec)
Definition: PetscTools.hpp:351
PdeAndBoundaryConditions(AbstractLinearEllipticPde< DIM, DIM > *pPde=NULL, AbstractBoundaryCondition< DIM > *pBoundaryCondition=NULL, bool isNeumannBoundaryCondition=true, Vec solution=NULL, bool deleteMemberPointersInDestructor=false)
AbstractBoundaryCondition< DIM > * GetBoundaryCondition() const
AbstractLinearEllipticPde< DIM, DIM > * GetPde()
void SetUpSourceTermsForAveragedSourcePde(TetrahedralMesh< DIM, DIM > *pMesh, std::map< CellPtr, unsigned > *pCellPdeElementMap=NULL)