PropagationPropertiesCalculator.hpp

/*

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*/


#ifndef _PROPAGATIONPROPERTIESCALCULATOR_HPP_
#define _PROPAGATIONPROPERTIESCALCULATOR_HPP_

#include "Hdf5DataReader.hpp"
#include <string>


class PropagationPropertiesCalculator
{
private:
    Hdf5DataReader* mpDataReader;
    const std::string mVoltageName;
    std::vector<double> mTimes;
    unsigned mCachedNodeGlobalIndex;
    std::vector<double> mCachedVoltages;

protected:
    std::vector<double>& rGetCachedVoltages(unsigned globalNodeIndex);

public:
    PropagationPropertiesCalculator(Hdf5DataReader* pDataReader,
                                    const std::string voltageName = "V");

    virtual ~PropagationPropertiesCalculator();

    double CalculateMaximumUpstrokeVelocity(unsigned globalNodeIndex);

    std::vector<double> CalculateAllMaximumUpstrokeVelocities(unsigned globalNodeIndex, double threshold);

    std::vector<double> CalculateUpstrokeTimes(unsigned globalNodeIndex, double threshold);

    double CalculateConductionVelocity(unsigned globalNearNodeIndex,
                                       unsigned globalFarNodeIndex,
                                       const double euclideanDistance);

     std::vector<double> CalculateAllConductionVelocities(unsigned globalNearNodeIndex,
                                                          unsigned globalFarNodeIndex,
                                                          const double euclideanDistance);
    double CalculateActionPotentialDuration(const double percentage,
                                            unsigned globalNodeIndex);
    double CalculatePeakMembranePotential(unsigned globalNodeIndex);

    std::vector<double> CalculateAllActionPotentialDurations(const double percentage,
                                                             unsigned globalNodeIndex,
                                                             double threshold);

    std::vector<std::vector<double> > CalculateAllActionPotentialDurationsForNodeRange(const double percentage,
                                                                                       unsigned lowerNodeIndex,
                                                                                       unsigned upperNodeIndex,
                                                                                       double threshold);

    std::vector<unsigned> CalculateAllAboveThresholdDepolarisations(unsigned globalNodeIndex,
                                                                    double threshold);

    unsigned CalculateAboveThresholdDepolarisationsForLastAp(unsigned globalNodeIndex,
                                                             double threshold);

    void SetHdf5DataReader(Hdf5DataReader* pDataReader);

};

#endif //_PROPAGATIONPROPERTIESCALCULATOR_HPP_