Chaste  Release::3.4
SphereGeometryBoundaryCondition.hpp
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35 
36 #ifndef SPHEREGEOMETRYBOUNDARYCONDITION_HPP_
37 #define SPHEREGEOMETRYBOUNDARYCONDITION_HPP_
38 
39 #include "AbstractCellPopulationBoundaryCondition.hpp"
40 
41 #include "ChasteSerialization.hpp"
42 #include <boost/serialization/base_object.hpp>
43 #include <boost/serialization/vector.hpp>
44 
51 template<unsigned DIM>
53 {
54 private:
55 
57  c_vector<double, DIM> mCentreOfSphere;
58 
61 
64 
73  template<class Archive>
74  void serialize(Archive & archive, const unsigned int version)
75  {
76  archive & boost::serialization::base_object<AbstractCellPopulationBoundaryCondition<DIM> >(*this);
77  archive & mMaximumDistance;
78  }
79 
80 public:
81 
91  c_vector<double, DIM> centre,
92  double radius,
93  double distance=1e-5);
94 
98  const c_vector<double, DIM>& rGetCentreOfSphere() const;
99 
103  double GetRadiusOfSphere() const;
104 
112  void ImposeBoundaryCondition(const std::map<Node<DIM>*, c_vector<double, DIM> >& rOldLocations);
113 
122 
129  void OutputCellPopulationBoundaryConditionParameters(out_stream& rParamsFile);
130 };
131 
134 
135 namespace boost
136 {
137 namespace serialization
138 {
142 template<class Archive, unsigned DIM>
143 inline void save_construct_data(
144  Archive & ar, const SphereGeometryBoundaryCondition<DIM>* t, const unsigned int file_version)
145 {
146  // Save data required to construct instance
147  const AbstractCellPopulation<DIM>* const p_cell_population = t->GetCellPopulation();
148  ar << p_cell_population;
149 
150  // Archive c_vectors one component at a time
151  c_vector<double, DIM> point = t->rGetCentreOfSphere();
152  for (unsigned i=0; i<DIM; i++)
153  {
154  ar << point[i];
155  }
156 
157  // Archive other member variables
158  double radius = t->GetRadiusOfSphere();
159  ar << radius;
160 }
161 
165 template<class Archive, unsigned DIM>
166 inline void load_construct_data(
167  Archive & ar, SphereGeometryBoundaryCondition<DIM>* t, const unsigned int file_version)
168 {
169  // Retrieve data from archive required to construct new instance
170  AbstractCellPopulation<DIM>* p_cell_population;
171  ar >> p_cell_population;
172 
173  // Retrieve c_vectors one component at a time
174  c_vector<double, DIM> point;
175  for (unsigned i=0; i<DIM; i++)
176  {
177  ar >> point[i];
178  }
179 
180  // Retrieve other member variables
181  double radius;
182  ar >> radius;
183 
184  // Invoke inplace constructor to initialise instance
185  ::new(t)SphereGeometryBoundaryCondition<DIM>(p_cell_population, point, radius);
186 }
187 }
188 } // namespace ...
189 
190 #endif /*SPHEREGEOMETRYBOUNDARYCONDITION_HPP_*/
const AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > * GetCellPopulation() const
Definition: Node.hpp:58
void ImposeBoundaryCondition(const std::map< Node< DIM > *, c_vector< double, DIM > > &rOldLocations)
void OutputCellPopulationBoundaryConditionParameters(out_stream &rParamsFile)
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
void serialize(Archive &archive, const unsigned int version)
SphereGeometryBoundaryCondition(AbstractCellPopulation< DIM > *pCellPopulation, c_vector< double, DIM > centre, double radius, double distance=1e-5)
friend class boost::serialization::access
const c_vector< double, DIM > & rGetCentreOfSphere() const