StreeterFibreGenerator.hpp

/*

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*/
#ifndef STREETERFIBREGENERATOR_HPP_
#define STREETERFIBREGENERATOR_HPP_

#include <vector>
#include <string>
#include <set>
#include "DistanceMapCalculator.hpp"
#include "AbstractTetrahedralMesh.hpp"
#include "HeartGeometryInformation.hpp"
#include "AbstractPerElementWriter.hpp"
#include "OutputFileHandler.hpp"

template<unsigned SPACE_DIM>
class StreeterFibreGenerator : public AbstractPerElementWriter<SPACE_DIM, SPACE_DIM, SPACE_DIM*SPACE_DIM>
{
private:
    HeartGeometryInformation<SPACE_DIM>* mpGeometryInfo; 
    c_vector <double, SPACE_DIM> mApexToBase; 
    double GetAveragedThicknessLocalNode(const unsigned nodeIndex,
                                         const std::vector<double>& wallThickness) const;

   double GetFibreMaxAngle(const c_vector<HeartRegionType, SPACE_DIM+1>& nodesRegionsForElement) const;

   std::vector<double> mWallThickness;

   std::vector<double> mAveragedWallThickness;

   bool mLogInfo;

protected:

   void Visit(Element<SPACE_DIM, SPACE_DIM>* pElement,
                      unsigned localElementIndex,
                      c_vector<double, SPACE_DIM*SPACE_DIM>& rData);

   void WriteHeaderOnMaster();

   void PreWriteCalculations(OutputFileHandler& rOutputDirectory);

public:
    StreeterFibreGenerator(AbstractTetrahedralMesh<SPACE_DIM,SPACE_DIM>& rMesh);

    ~StreeterFibreGenerator();

    void SetSurfaceFiles(const std::string& rEpicardiumFile,
                         const std::string& rRightVentricleFile,
                         const std::string& rLeftVentricleFile,
                         bool indexFromZero);



    void SetApexToBase(const c_vector<double, SPACE_DIM>& apexToBase);

    void SetApexToBase(unsigned axis);

    void SetLogInfo(bool logInfo = true);
};

#endif /*STREETERFIBREGENERATOR_HPP_*/