Chaste  Release::3.4
StreeterFibreGenerator.hpp
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35 #ifndef STREETERFIBREGENERATOR_HPP_
36 #define STREETERFIBREGENERATOR_HPP_
37 
38 #include <vector>
39 #include <string>
40 #include <set>
41 #include "DistanceMapCalculator.hpp"
42 #include "AbstractTetrahedralMesh.hpp"
43 #include "HeartGeometryInformation.hpp"
44 #include "AbstractPerElementWriter.hpp"
45 #include "OutputFileHandler.hpp"
46 
63 template<unsigned SPACE_DIM>
64 class StreeterFibreGenerator : public AbstractPerElementWriter<SPACE_DIM, SPACE_DIM, SPACE_DIM*SPACE_DIM>
65 {
66 private:
69  c_vector <double, SPACE_DIM> mApexToBase;
79  double GetAveragedThicknessLocalNode(const unsigned nodeIndex,
80  const std::vector<double>& wallThickness) const;
81 
87  double GetFibreMaxAngle(const c_vector<HeartRegionType, SPACE_DIM+1>& nodesRegionsForElement) const;
88 
90  std::vector<double> mWallThickness;
91 
93  std::vector<double> mAveragedWallThickness;
94 
96  bool mLogInfo;
97 
98 protected:
99 
109  void Visit(Element<SPACE_DIM, SPACE_DIM>* pElement,
110  unsigned localElementIndex,
111  c_vector<double, SPACE_DIM*SPACE_DIM>& rData);
112 
116  void WriteHeaderOnMaster();
117 
128  void PreWriteCalculations(OutputFileHandler& rOutputDirectory);
129 
130 public:
137 
142 
156  void SetSurfaceFiles(const std::string& rEpicardiumFile,
157  const std::string& rRightVentricleFile,
158  const std::string& rLeftVentricleFile,
159  bool indexFromZero);
160 
161 
162 
167  void SetApexToBase(const c_vector<double, SPACE_DIM>& apexToBase);
168 
173  void SetApexToBase(unsigned axis);
174 
181  void SetLogInfo(bool logInfo = true);
182 };
183 
184 #endif /*STREETERFIBREGENERATOR_HPP_*/
void SetLogInfo(bool logInfo=true)
void SetApexToBase(const c_vector< double, SPACE_DIM > &apexToBase)
c_vector< double, SPACE_DIM > mApexToBase
std::vector< double > mAveragedWallThickness
StreeterFibreGenerator(AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > &rMesh)
double GetAveragedThicknessLocalNode(const unsigned nodeIndex, const std::vector< double > &wallThickness) const
void SetSurfaceFiles(const std::string &rEpicardiumFile, const std::string &rRightVentricleFile, const std::string &rLeftVentricleFile, bool indexFromZero)
double GetFibreMaxAngle(const c_vector< HeartRegionType, SPACE_DIM+1 > &nodesRegionsForElement) const
void PreWriteCalculations(OutputFileHandler &rOutputDirectory)
std::vector< double > mWallThickness
HeartGeometryInformation< SPACE_DIM > * mpGeometryInfo
void Visit(Element< SPACE_DIM, SPACE_DIM > *pElement, unsigned localElementIndex, c_vector< double, SPACE_DIM *SPACE_DIM > &rData)