Chaste  Release::3.4
AbstractCardiacCell Member List

This is the complete list of members for AbstractCardiacCell, including all inherited members.

AbstractCardiacCell(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)AbstractCardiacCell
AbstractCardiacCellInterface(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)AbstractCardiacCellInterface
AbstractOdeSystem(unsigned numberOfStateVariables)AbstractOdeSystem
AbstractParameterisedSystem(unsigned numberOfStateVariables)AbstractParameterisedSystem< std::vector< double > >
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables)AbstractUntemplatedParameterisedSystem
AdjustOutOfRangeSlowValues(std::vector< double > &rSlowValues)AbstractCardiacCellvirtual
boost::serialization::access classAbstractCardiacCellfriend
CalculateRootFunction(double time, const std::vector< double > &rY)AbstractOdeSystemvirtual
CalculateStoppingEvent(double time, const std::vector< double > &rY)AbstractOdeSystemvirtual
CheckForArchiveFix()AbstractCardiacCellprivate
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames)AbstractParameterisedSystem< std::vector< double > >protected
Compute(double tStart, double tEnd, double tSamp=0.0)AbstractCardiacCellvirtual
ComputeDerivedQuantities(double time, const std::vector< double > &rState)AbstractParameterisedSystem< std::vector< double > >virtual
ComputeDerivedQuantitiesFromCurrentState(double time)AbstractParameterisedSystem< std::vector< double > >
ComputeExceptVoltage(double tStart, double tEnd)AbstractCardiacCellvirtual
DumpState(const std::string &rMessage)AbstractParameterisedSystem< std::vector< double > >protected
DumpState(const std::string &rMessage, std::vector< double >Y)AbstractParameterisedSystem< std::vector< double > >protected
DumpState(const std::string &rMessage, std::vector< double >Y, double time)AbstractParameterisedSystem< std::vector< double > >protected
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY)=0AbstractOdeSystempure virtual
GetAnyVariable(const std::string &rName, double time=0.0)AbstractCardiacCellvirtual
AbstractOdeSystem::GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
AbstractOdeSystem::GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariableIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetAttribute(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetDerivedQuantityIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetDerivedQuantityUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetIIonic(const std::vector< double > *pStateVariables=NULL)=0AbstractCardiacCellInterfacepure virtual
GetInitialConditions() constAbstractParameterisedSystem< std::vector< double > >
GetIntracellularAreaStimulus(double time)AbstractCardiacCellInterface
GetIntracellularCalciumConcentration()AbstractCardiacCellInterfacevirtual
GetIntracellularStimulus(double time)AbstractCardiacCellInterface
GetLookupTableCollection()AbstractCardiacCellInterfaceinlinevirtual
GetNumberOfAttributes() const AbstractUntemplatedParameterisedSystem
GetNumberOfDerivedQuantities() const AbstractUntemplatedParameterisedSystem
GetNumberOfParameters() const AbstractCardiacCellvirtual
GetNumberOfStateVariables() const AbstractCardiacCellvirtual
GetNumSlowValues()AbstractCardiacCellvirtual
GetParameter(const std::string &rParameterName)AbstractCardiacCellvirtual
GetParameter(unsigned parameterIndex)AbstractCardiacCellvirtual
AbstractOdeSystem::GetParameter(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
AbstractOdeSystem::GetParameter(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetParameterIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetParameterUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetSlowValues(std::vector< double > &rSlowValues)AbstractCardiacCellvirtual
GetSolver() const AbstractCardiacCellInterface
GetStateVariable(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariable(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariableIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetStateVariables()AbstractParameterisedSystem< std::vector< double > >
GetStateVariableUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetStdVecStateVariables()AbstractCardiacCellvirtual
GetStimulus(double time)AbstractCardiacCellInterface
GetStimulusFunction()AbstractCardiacCellInterface
GetStimulusFunction() const AbstractCardiacCellInterface
GetSystemInformation() const AbstractUntemplatedParameterisedSystem
GetSystemName() const AbstractUntemplatedParameterisedSystem
GetUseAnalyticJacobian()AbstractOdeSystem
GetVoltage()AbstractCardiacCellvirtual
GetVoltageIndex()AbstractCardiacCellInterface
HasAnyVariable(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasAttribute(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasCellMLDefaultStimulus()AbstractCardiacCellInterface
HasDerivedQuantity(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasParameter(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasStateVariable(const std::string &rName) const AbstractUntemplatedParameterisedSystem
Init()AbstractCardiacCell
IsFastOnly()AbstractCardiacCellvirtual
mDtAbstractCardiacCellprotected
mFixedVoltageAbstractCardiacCellInterfaceprotected
mHasDefaultStimulusFromCellMLAbstractCardiacCellInterfaceprotected
mIsUsedInTissueAbstractCardiacCellInterfaceprotected
mNumberOfStateVariablesAbstractUntemplatedParameterisedSystemprotected
mParametersAbstractParameterisedSystem< std::vector< double > >protected
mpIntracellularStimulusAbstractCardiacCellInterfaceprotected
mpOdeSolverAbstractCardiacCellInterfaceprotected
mpSystemInfoAbstractUntemplatedParameterisedSystemprotected
mSetVoltageDerivativeToZeroAbstractCardiacCellInterfaceprotected
mStateVariablesAbstractParameterisedSystem< std::vector< double > >protected
mUseAnalyticJacobianAbstractOdeSystemprotected
mVoltageIndexAbstractCardiacCellInterfaceprotected
ResetToInitialConditions()AbstractParameterisedSystem< std::vector< double > >virtual
rGetConstStateVariables() const AbstractOdeSystem
rGetDerivedQuantityNames() const AbstractUntemplatedParameterisedSystem
rGetDerivedQuantityUnits() const AbstractUntemplatedParameterisedSystem
rGetParameterNames() const AbstractUntemplatedParameterisedSystem
rGetParameterUnits() const AbstractUntemplatedParameterisedSystem
rGetStateVariableNames() const AbstractCardiacCellvirtual
rGetStateVariables()AbstractParameterisedSystem< std::vector< double > >
rGetStateVariableUnits() const AbstractUntemplatedParameterisedSystem
serialize(Archive &archive, const unsigned int version)AbstractCardiacCellinlineprivate
SetAnyVariable(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetAnyVariable(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialCondition(unsigned index, double initialCondition)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions)AbstractParameterisedSystem< std::vector< double > >
SetFixedVoltage(double voltage)AbstractCardiacCellInterface
SetIntracellularStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus)AbstractCardiacCellInterface
SetParameter(const std::string &rParameterName, double value)AbstractCardiacCellvirtual
AbstractOdeSystem::SetParameter(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetSlowValues(const std::vector< double > &rSlowValues)AbstractCardiacCellvirtual
SetSolver(boost::shared_ptr< AbstractIvpOdeSolver > pSolver)AbstractCardiacCellInterface
SetState(CellModelState state)AbstractCardiacCellvirtual
SetStateVariable(unsigned index, double newValue)AbstractCardiacCellvirtual
SetStateVariable(const std::string &rName, double newValue)AbstractCardiacCellvirtual
SetStateVariables(const std::vector< double > &rVariables)AbstractCardiacCellvirtual
SetStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus)AbstractCardiacCellInterface
SetStretch(double stretch)AbstractCardiacCellInterfaceinlinevirtual
SetTimestep(double dt)AbstractCardiacCellvirtual
SetUsedInTissueSimulation(bool tissue=true)AbstractCardiacCellInterface
SetVoltage(double voltage)AbstractCardiacCellvirtual
SetVoltageDerivativeToZero(bool clamp=true)AbstractCardiacCellInterfacevirtual
SolveAndUpdateState(double tStart, double tEnd)AbstractCardiacCellvirtual
UseCellMLDefaultStimulus()AbstractCardiacCellInterfacevirtual
VerifyStateVariables()AbstractParameterisedSystem< std::vector< double > >inlinevirtual
~AbstractCardiacCell()AbstractCardiacCellvirtual
~AbstractCardiacCellInterface()AbstractCardiacCellInterfacevirtual
~AbstractOdeSystem()AbstractOdeSystemvirtual
~AbstractUntemplatedParameterisedSystem()AbstractUntemplatedParameterisedSystemvirtual