| AbstractOdeSystem(unsigned numberOfStateVariables) | AbstractOdeSystem | |
| AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
| AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables) | AbstractUntemplatedParameterisedSystem | |
| Alarcon2004OxygenBasedCellCycleOdeSystem(double oxygenConcentration, bool isLabelled, std::vector< double > stateVariables=std::vector< double >()) | Alarcon2004OxygenBasedCellCycleOdeSystem | |
| boost::serialization::access (defined in Alarcon2004OxygenBasedCellCycleOdeSystem) | Alarcon2004OxygenBasedCellCycleOdeSystem | friend |
| CalculateRootFunction(double time, const std::vector< double > &rY) | AbstractOdeSystem | virtual |
| CalculateStoppingEvent(double time, const std::vector< double > &rY) | Alarcon2004OxygenBasedCellCycleOdeSystem | virtual |
| CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) | AbstractParameterisedSystem< std::vector< double > > | protected |
| ComputeDerivedQuantities(double time, const std::vector< double > &rState) | AbstractParameterisedSystem< std::vector< double > > | virtual |
| ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< std::vector< double > > | |
| DumpState(const std::string &rMessage) | AbstractParameterisedSystem< std::vector< double > > | protected |
| DumpState(const std::string &rMessage, std::vector< double >Y) | AbstractParameterisedSystem< std::vector< double > > | protected |
| DumpState(const std::string &rMessage, std::vector< double >Y, double time) | AbstractParameterisedSystem< std::vector< double > > | protected |
| EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY) | Alarcon2004OxygenBasedCellCycleOdeSystem | virtual |
| GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
| GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
| GetAnyVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetAnyVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetAnyVariableUnits(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetDerivedQuantityIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetDerivedQuantityUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetInitialConditions() const | AbstractParameterisedSystem< std::vector< double > > | |
| GetNumberOfAttributes() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfDerivedQuantities() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfParameters() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfStateVariables() const | AbstractUntemplatedParameterisedSystem | |
| GetOxygenConcentration() const | Alarcon2004OxygenBasedCellCycleOdeSystem | |
| GetParameter(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetParameter(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetParameterIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetParameterUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetStateVariable(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariable(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetSystemInformation() const | AbstractUntemplatedParameterisedSystem | |
| GetSystemName() const | AbstractUntemplatedParameterisedSystem | |
| GetUseAnalyticJacobian() | AbstractOdeSystem | |
| HasAnyVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasDerivedQuantity(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasParameter(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasStateVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| Init() | Alarcon2004OxygenBasedCellCycleOdeSystem | |
| IsLabelled() const | Alarcon2004OxygenBasedCellCycleOdeSystem | |
| ma1 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| ma2 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| ma3 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| ma4 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| mB | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| mb3 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| mb4 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| mc1 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| mc2 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| md1 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| md2 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| mEta | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| mIsLabelled | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| mJ3 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| mJ4 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| mMstar | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| mNumberOfStateVariables | AbstractUntemplatedParameterisedSystem | protected |
| mOxygenConcentration | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| mParameters | AbstractParameterisedSystem< std::vector< double > > | protected |
| mpSystemInfo | AbstractUntemplatedParameterisedSystem | protected |
| mStateVariables | AbstractParameterisedSystem< std::vector< double > > | protected |
| mUseAnalyticJacobian | AbstractOdeSystem | protected |
| mxThreshold | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| myThreshold | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
| ResetToInitialConditions() | AbstractParameterisedSystem< std::vector< double > > | virtual |
| rGetConstStateVariables() const | AbstractOdeSystem | |
| rGetDerivedQuantityNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetDerivedQuantityUnits() const | AbstractUntemplatedParameterisedSystem | |
| rGetParameterNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetParameterUnits() const | AbstractUntemplatedParameterisedSystem | |
| rGetStateVariableNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
| rGetStateVariableUnits() const | AbstractUntemplatedParameterisedSystem | |
| serialize(Archive &archive, const unsigned int version) | Alarcon2004OxygenBasedCellCycleOdeSystem | inlineprivate |
| SetAnyVariable(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetAnyVariable(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractParameterisedSystem< std::vector< double > > | |
| SetDefaultInitialConditions(const std::vector< double > &rInitialConditions) | AbstractParameterisedSystem< std::vector< double > > | |
| SetIsLabelled(bool isLabelled) | Alarcon2004OxygenBasedCellCycleOdeSystem | |
| SetParameter(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetParameter(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariable(unsigned index, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariable(const std::string &rName, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariables(const std::vector< double > &rStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
| VerifyStateVariables() | AbstractParameterisedSystem< std::vector< double > > | inlinevirtual |
| ~AbstractOdeSystem() | AbstractOdeSystem | virtual |
| ~AbstractUntemplatedParameterisedSystem() | AbstractUntemplatedParameterisedSystem | virtual |
| ~Alarcon2004OxygenBasedCellCycleOdeSystem() | Alarcon2004OxygenBasedCellCycleOdeSystem | |
1.8.6