Chaste  Release::3.4
Alarcon2004OxygenBasedCellCycleOdeSystem Member List

This is the complete list of members for Alarcon2004OxygenBasedCellCycleOdeSystem, including all inherited members.

AbstractOdeSystem(unsigned numberOfStateVariables)AbstractOdeSystem
AbstractParameterisedSystem(unsigned numberOfStateVariables)AbstractParameterisedSystem< std::vector< double > >
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables)AbstractUntemplatedParameterisedSystem
Alarcon2004OxygenBasedCellCycleOdeSystem(double oxygenConcentration, bool isLabelled, std::vector< double > stateVariables=std::vector< double >())Alarcon2004OxygenBasedCellCycleOdeSystem
boost::serialization::access (defined in Alarcon2004OxygenBasedCellCycleOdeSystem)Alarcon2004OxygenBasedCellCycleOdeSystemfriend
CalculateRootFunction(double time, const std::vector< double > &rY)AbstractOdeSystemvirtual
CalculateStoppingEvent(double time, const std::vector< double > &rY)Alarcon2004OxygenBasedCellCycleOdeSystemvirtual
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames)AbstractParameterisedSystem< std::vector< double > >protected
ComputeDerivedQuantities(double time, const std::vector< double > &rState)AbstractParameterisedSystem< std::vector< double > >virtual
ComputeDerivedQuantitiesFromCurrentState(double time)AbstractParameterisedSystem< std::vector< double > >
DumpState(const std::string &rMessage)AbstractParameterisedSystem< std::vector< double > >protected
DumpState(const std::string &rMessage, std::vector< double >Y)AbstractParameterisedSystem< std::vector< double > >protected
DumpState(const std::string &rMessage, std::vector< double >Y, double time)AbstractParameterisedSystem< std::vector< double > >protected
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY)Alarcon2004OxygenBasedCellCycleOdeSystemvirtual
GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariableIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetAttribute(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetDerivedQuantityIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetDerivedQuantityUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetInitialConditions() constAbstractParameterisedSystem< std::vector< double > >
GetNumberOfAttributes() const AbstractUntemplatedParameterisedSystem
GetNumberOfDerivedQuantities() const AbstractUntemplatedParameterisedSystem
GetNumberOfParameters() const AbstractUntemplatedParameterisedSystem
GetNumberOfStateVariables() const AbstractUntemplatedParameterisedSystem
GetOxygenConcentration() const Alarcon2004OxygenBasedCellCycleOdeSystem
GetParameter(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetParameter(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetParameterIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetParameterUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetStateVariable(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariable(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariableIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetStateVariables()AbstractParameterisedSystem< std::vector< double > >
GetStateVariableUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetSystemInformation() const AbstractUntemplatedParameterisedSystem
GetSystemName() const AbstractUntemplatedParameterisedSystem
GetUseAnalyticJacobian()AbstractOdeSystem
HasAnyVariable(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasAttribute(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasDerivedQuantity(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasParameter(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasStateVariable(const std::string &rName) const AbstractUntemplatedParameterisedSystem
Init()Alarcon2004OxygenBasedCellCycleOdeSystem
IsLabelled() const Alarcon2004OxygenBasedCellCycleOdeSystem
ma1Alarcon2004OxygenBasedCellCycleOdeSystemprivate
ma2Alarcon2004OxygenBasedCellCycleOdeSystemprivate
ma3Alarcon2004OxygenBasedCellCycleOdeSystemprivate
ma4Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mBAlarcon2004OxygenBasedCellCycleOdeSystemprivate
mb3Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mb4Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mc1Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mc2Alarcon2004OxygenBasedCellCycleOdeSystemprivate
md1Alarcon2004OxygenBasedCellCycleOdeSystemprivate
md2Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mEtaAlarcon2004OxygenBasedCellCycleOdeSystemprivate
mIsLabelledAlarcon2004OxygenBasedCellCycleOdeSystemprivate
mJ3Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mJ4Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mMstarAlarcon2004OxygenBasedCellCycleOdeSystemprivate
mNumberOfStateVariablesAbstractUntemplatedParameterisedSystemprotected
mOxygenConcentrationAlarcon2004OxygenBasedCellCycleOdeSystemprivate
mParametersAbstractParameterisedSystem< std::vector< double > >protected
mpSystemInfoAbstractUntemplatedParameterisedSystemprotected
mStateVariablesAbstractParameterisedSystem< std::vector< double > >protected
mUseAnalyticJacobianAbstractOdeSystemprotected
mxThresholdAlarcon2004OxygenBasedCellCycleOdeSystemprivate
myThresholdAlarcon2004OxygenBasedCellCycleOdeSystemprivate
ResetToInitialConditions()AbstractParameterisedSystem< std::vector< double > >virtual
rGetConstStateVariables() const AbstractOdeSystem
rGetDerivedQuantityNames() const AbstractUntemplatedParameterisedSystem
rGetDerivedQuantityUnits() const AbstractUntemplatedParameterisedSystem
rGetParameterNames() const AbstractUntemplatedParameterisedSystem
rGetParameterUnits() const AbstractUntemplatedParameterisedSystem
rGetStateVariableNames() const AbstractUntemplatedParameterisedSystem
rGetStateVariables()AbstractParameterisedSystem< std::vector< double > >
rGetStateVariableUnits() const AbstractUntemplatedParameterisedSystem
serialize(Archive &archive, const unsigned int version)Alarcon2004OxygenBasedCellCycleOdeSysteminlineprivate
SetAnyVariable(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetAnyVariable(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialCondition(unsigned index, double initialCondition)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions)AbstractParameterisedSystem< std::vector< double > >
SetIsLabelled(bool isLabelled)Alarcon2004OxygenBasedCellCycleOdeSystem
SetParameter(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetParameter(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(unsigned index, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(const std::string &rName, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariables(const std::vector< double > &rStateVariables)AbstractParameterisedSystem< std::vector< double > >
VerifyStateVariables()AbstractParameterisedSystem< std::vector< double > >inlinevirtual
~AbstractOdeSystem()AbstractOdeSystemvirtual
~AbstractUntemplatedParameterisedSystem()AbstractUntemplatedParameterisedSystemvirtual
~Alarcon2004OxygenBasedCellCycleOdeSystem()Alarcon2004OxygenBasedCellCycleOdeSystem