| AbstractMesh() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| AbstractTetrahedralMesh() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| AddElement(Element< ELEMENT_DIM, SPACE_DIM > *pNewElement) | MutableMesh< SPACE_DIM, SPACE_DIM > | |
| AddHaloNode(boost::shared_ptr< Node< SPACE_DIM > > pNewNode) | NodesOnlyMesh< 2 > | |
| AddHaloNodesToBoxes() | NodesOnlyMesh< 2 > | |
| AddMovedNode(boost::shared_ptr< Node< SPACE_DIM > > pMovedNode) | NodesOnlyMesh< 2 > | |
| AddNode(Node< 2 > *pNewNode) | Cylindrical2dNodesOnlyMesh | |
| NodesOnlyMesh< 2 >::AddNode(Node< SPACE_DIM > *pNewNode) | NodesOnlyMesh< 2 > | virtual |
| AddNodesToBoxes() | NodesOnlyMesh< 2 > | |
| boost::serialization::access class | Cylindrical2dNodesOnlyMesh | friend |
| BoundaryElementIterator typedef | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| BoundaryNodeIterator typedef | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| CalculateBoundaryNodePairs(std::vector< std::pair< Node< SPACE_DIM > *, Node< SPACE_DIM > * > > &rNodePairs, std::map< unsigned, std::set< unsigned > > &rNodeNeighbours) | NodesOnlyMesh< 2 > | |
| CalculateBoundingBox(const std::vector< Node< SPACE_DIM > * > &rNodes) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| CalculateBoundingBox() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| CalculateDesignatedOwnershipOfBoundaryElement(unsigned faceIndex) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| CalculateDesignatedOwnershipOfElement(unsigned elementIndex) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| CalculateInteriorNodePairs(std::vector< std::pair< Node< SPACE_DIM > *, Node< SPACE_DIM > * > > &rNodePairs, std::map< unsigned, std::set< unsigned > > &rNodeNeighbours) | NodesOnlyMesh< 2 > | |
| CalculateMaximumContainingElementsPerProcess() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| CalculateMaximumNodeConnectivityPerProcess() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| CalculateMinMaxEdgeLengths() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| CalculateNodeExchange(std::vector< std::vector< unsigned > > &rNodesToSendPerProcess, std::vector< std::vector< unsigned > > &rNodesToReceivePerProcess) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| CalculateNodesOutsideLocalDomain() | NodesOnlyMesh< 2 > | |
| CheckIsConforming() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| CheckIsVoronoi(double maxPenetration=0.0) | MutableMesh< SPACE_DIM, SPACE_DIM > | |
| CheckOutwardNormals() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| Clear() | NodesOnlyMesh< 2 > | virtual |
| ClearBoxCollection() | NodesOnlyMesh< 2 > | protected |
| ClearHaloNodes() | NodesOnlyMesh< 2 > | |
| ConstructCuboid(unsigned width, unsigned height, unsigned depth) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ConstructFromMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > &rOtherMesh) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| ConstructFromMeshReader(AbstractMeshReader< SPACE_DIM, SPACE_DIM > &rMeshReader) | NodesOnlyMesh< 2 > | |
| MutableMesh< SPACE_DIM, SPACE_DIM >::ConstructFromMeshReader(AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ConstructLinearMesh(unsigned width) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ConstructNodesWithoutMesh(const std::vector< Node< SPACE_DIM > * > &rNodes, double maxInteractionDistance) | NodesOnlyMesh< 2 > | |
| ConstructNodesWithoutMesh(const AbstractMesh< SPACE_DIM, SPACE_DIM > &rGeneratingMesh, double maxInteractionDistance) | NodesOnlyMesh< 2 > | |
| ConstructRectangularMesh(unsigned width, unsigned height, bool stagger=true) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ConstructRegularSlabMesh(double spaceStep, double width, double height=0, double depth=0) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| ConstructRegularSlabMeshWithDimensionSplit(unsigned dimension, double spaceStep, double width, double height=0, double depth=0) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| Cylindrical2dNodesOnlyMesh(double width) | Cylindrical2dNodesOnlyMesh | |
| DeleteBoundaryNodeAt(unsigned index) | MutableMesh< SPACE_DIM, SPACE_DIM > | |
| DeleteElement(unsigned index) | MutableMesh< SPACE_DIM, SPACE_DIM > | virtual |
| DeleteMovedNode(unsigned index) | NodesOnlyMesh< 2 > | |
| DeleteNode(unsigned index) | NodesOnlyMesh< 2 > | virtual |
| DeleteNodePriorToReMesh(unsigned index) | MutableMesh< SPACE_DIM, SPACE_DIM > | |
| EdgesBegin() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| EdgesEnd() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| ExportToMesher(NodeMap &map, MESHER_IO &mesherInput, int *elementList=NULL) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| FreeTriangulateIo(triangulateio &mesherIo) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| GetAngleBetweenNodes(unsigned indexA, unsigned indexB) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetBoundaryElement(unsigned index) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetBoundaryElementIteratorBegin() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetBoundaryElementIteratorEnd() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetBoundaryNodeIteratorBegin() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetBoundaryNodeIteratorEnd() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetBoxCollection() | NodesOnlyMesh< 2 > | protected |
| GetContainingElementIndex(const ChastePoint< SPACE_DIM > &rTestPoint, bool strict=false, std::set< unsigned > testElements=std::set< unsigned >(), bool onlyTryWithTestElements=false) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetContainingElementIndexWithInitialGuess(const ChastePoint< SPACE_DIM > &rTestPoint, unsigned startingElementGuess, bool strict=false) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetContainingElementIndices(const ChastePoint< SPACE_DIM > &rTestPoint) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetDistanceBetweenNodes(unsigned indexA, unsigned indexB) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetDistributedVectorFactory() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetElement(unsigned index) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetElementIteratorBegin(bool skipDeletedElements=true) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | inline |
| GetElementIteratorEnd() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | inline |
| GetHaloNodeIndices(std::vector< unsigned > &rHaloIndices) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetInverseJacobianForElement(unsigned elementIndex, c_matrix< double, SPACE_DIM, ELEMENT_DIM > &rJacobian, double &rJacobianDeterminant, c_matrix< double, ELEMENT_DIM, SPACE_DIM > &rInverseJacobian) const | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetJacobianForElement(unsigned elementIndex, c_matrix< double, SPACE_DIM, SPACE_DIM > &rJacobian, double &rJacobianDeterminant) const | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetMaximumInteractionDistance() | NodesOnlyMesh< 2 > | |
| GetMaximumNodeIndex() | NodesOnlyMesh< 2 > | virtual |
| GetMeshFileBaseName() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNearestElementIndex(const ChastePoint< SPACE_DIM > &rTestPoint) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNearestElementIndexFromTestElements(const ChastePoint< SPACE_DIM > &rTestPoint, std::set< unsigned > testElements) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNearestNodeIndex(const ChastePoint< SPACE_DIM > &rTestPoint) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNode(unsigned index) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNodeFromPrePermutationIndex(unsigned index) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNodeIteratorBegin(bool skipDeletedNodes=true) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | inline |
| GetNodeIteratorEnd() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | inline |
| GetNodeOrHaloNode(unsigned index) const | NodesOnlyMesh< 2 > | virtual |
| GetNumAllBoundaryElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNumAllElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNumAllNodes() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNumBoundaryElements() const | MutableMesh< SPACE_DIM, SPACE_DIM > | virtual |
| GetNumBoundaryNodes() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNumCableElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNumElements() const | MutableMesh< SPACE_DIM, SPACE_DIM > | virtual |
| GetNumLocalBoundaryElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNumLocalElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNumNodeAttributes() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNumNodes() const | NodesOnlyMesh< 2 > | virtual |
| GetNumVertices() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetSurfaceArea() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetVectorFromAtoB(const c_vector< double, 2 > &rLocation1, const c_vector< double, 2 > &rLocation2) | Cylindrical2dNodesOnlyMesh | |
| NodesOnlyMesh< 2 >::GetVectorFromAtoB(const c_vector< double, SPACE_DIM > &rLocationA, const c_vector< double, SPACE_DIM > &rLocationB) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetVolume() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetWeightedDirectionForBoundaryElement(unsigned elementIndex, c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant) const | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetWeightedDirectionForElement(unsigned elementIndex, c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant) const | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetWidth(const unsigned &rDimension) const | Cylindrical2dNodesOnlyMesh | virtual |
| ImportFromMesher(MESHER_IO &mesherOutput, unsigned numberOfElements, int *elementList, unsigned numberOfFaces, int *faceList, int *edgeMarkerList) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| InitialiseTriangulateIo(triangulateio &mesherIo) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| IsMeshChanging() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| IsMeshOnDisk() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| IsOwned(c_vector< double, SPACE_DIM > &location) | NodesOnlyMesh< 2 > | |
| LoadBalanceMesh() | NodesOnlyMesh< 2 > | |
| mAddedNodes | MutableMesh< SPACE_DIM, SPACE_DIM > | protected |
| mBoundaryElementJacobianDeterminants | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mBoundaryElements | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mBoundaryElementWeightedDirections | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mBoundaryNodes | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mDeletedBoundaryElementIndices | MutableMesh< SPACE_DIM, SPACE_DIM > | protected |
| mDeletedElementIndices | MutableMesh< SPACE_DIM, SPACE_DIM > | protected |
| mDeletedNodeIndices | MutableMesh< SPACE_DIM, SPACE_DIM > | protected |
| mElementInverseJacobians | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mElementJacobianDeterminants | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mElementJacobians | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mElements | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mElementWeightedDirections | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mMeshChangesDuringSimulation | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mMeshFileBaseName | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mMeshIsLinear | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mNodePermutation | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mNodes | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| MoveMergeNode(unsigned index, unsigned targetIndex, bool concreteMove=true) | MutableMesh< SPACE_DIM, SPACE_DIM > | |
| mpDistributedVectorFactory | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| MutableMesh() | MutableMesh< SPACE_DIM, SPACE_DIM > | |
| MutableMesh(std::vector< Node< SPACE_DIM > * > nodes) | MutableMesh< SPACE_DIM, SPACE_DIM > | |
| mWidth | Cylindrical2dNodesOnlyMesh | private |
| NodesOnlyMesh() | NodesOnlyMesh< 2 > | |
| PermuteNodes() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| PermuteNodes(const std::vector< unsigned > &perm) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| ReadNodesPerProcessorFile(const std::string &rNodesPerProcessorFile) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| RefineElement(Element< ELEMENT_DIM, SPACE_DIM > *pElement, ChastePoint< SPACE_DIM > point) | MutableMesh< SPACE_DIM, SPACE_DIM > | |
| RefreshJacobianCachedData() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| RefreshMesh() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ReIndex(NodeMap &map) | MutableMesh< SPACE_DIM, SPACE_DIM > | |
| ReMesh(NodeMap &rMap) | NodesOnlyMesh< 2 > | virtual |
| MutableMesh< SPACE_DIM, SPACE_DIM >::ReMesh() | MutableMesh< SPACE_DIM, SPACE_DIM > | |
| RescaleMeshFromBoundaryNode(ChastePoint< 1 > updatedPoint, unsigned boundaryNodeIndex) | MutableMesh< SPACE_DIM, SPACE_DIM > | |
| ResizeBoxCollection() | NodesOnlyMesh< 2 > | |
| rGetHaloNodesToSendLeft() | NodesOnlyMesh< 2 > | |
| rGetHaloNodesToSendRight() | NodesOnlyMesh< 2 > | |
| rGetInitiallyOwnedNodes() | NodesOnlyMesh< 2 > | |
| rGetNodePermutation() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| rGetNodesToSendLeft() | NodesOnlyMesh< 2 > | |
| rGetNodesToSendRight() | NodesOnlyMesh< 2 > | |
| Rotate(c_matrix< double, SPACE_DIM, SPACE_DIM > rotationMatrix) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| Rotate(c_vector< double, 3 > axis, double angle) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| Rotate(double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| RotateX(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| RotateY(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| RotateZ(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| Scale(const double xFactor=1.0, const double yFactor=1.0, const double zFactor=1.0) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| serialize(Archive &archive, const unsigned int version) | Cylindrical2dNodesOnlyMesh | inlineprivate |
| SetCalculateNodeNeighbours(bool calculateNodeNeighbours) | NodesOnlyMesh< 2 > | |
| SetDistributedVectorFactory(DistributedVectorFactory *pFactory) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| SetElementOwnerships() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protectedvirtual |
| SetInitialBoxCollection(const c_vector< double, 2 *SPACE_DIM > domainSize, double maxInteractionDistance) | NodesOnlyMesh< 2 > | |
| SetMaximumInteractionDistance(double maxDistance) | NodesOnlyMesh< 2 > | |
| SetMeshHasChangedSinceLoading() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| SetMinimumNodeDomainBoundarySeparation(double separation) | NodesOnlyMesh< 2 > | |
| SetNode(unsigned nodeIndex, ChastePoint< 2 > point, bool concreteMove=false) | Cylindrical2dNodesOnlyMesh | |
| NodesOnlyMesh< 2 >::SetNode(unsigned nodeIndex, ChastePoint< SPACE_DIM > point, bool concreteMove=false) | NodesOnlyMesh< 2 > | virtual |
| SetUpBoxCollection(double cutOffLength, c_vector< double, 2 *2 > domainSize, int numLocalRows=PETSC_DECIDE, bool isPeriodic=true) | Cylindrical2dNodesOnlyMesh | virtual |
| NodesOnlyMesh< 2 >::SetUpBoxCollection(double cutOffLength, c_vector< double, 2 *SPACE_DIM > domainSize, int numLocalRows=PETSC_DECIDE, bool isPeriodic=false) | NodesOnlyMesh< 2 > | protectedvirtual |
| SolveBoundaryElementMapping(unsigned index) const | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protectedvirtual |
| SolveElementMapping(unsigned index) const | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protectedvirtual |
| SolveNodeMapping(unsigned index) const | NodesOnlyMesh< 2 > | virtual |
| SplitEdge(Node< SPACE_DIM > *pNodeA, Node< SPACE_DIM > *pNodeB) | MutableMesh< SPACE_DIM, SPACE_DIM > | |
| SplitLongEdges(double cutoffLength) | MutableMesh< SPACE_DIM, SPACE_DIM > | |
| TestCylindrical2dNodesOnlyMesh (defined in Cylindrical2dNodesOnlyMesh) | Cylindrical2dNodesOnlyMesh | friend |
| TetrahedralMesh() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| Translate(const c_vector< double, SPACE_DIM > &rDisplacement) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| Translate(const double xMovement=0.0, const double yMovement=0.0, const double zMovement=0.0) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| UpdateBoxCollection() | NodesOnlyMesh< 2 > | |
| ~AbstractMesh() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ~AbstractTetrahedralMesh() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ~MutableMesh() | MutableMesh< SPACE_DIM, SPACE_DIM > | virtual |
| ~NodesOnlyMesh() | NodesOnlyMesh< 2 > | virtual |
1.8.6