| AbstractMesh() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| AbstractTetrahedralMesh() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| boost::serialization::access class | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | friend |
| BoundaryElementIterator typedef | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| BoundaryNodeIterator typedef | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| CalculateBoundingBox() const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| AbstractTetrahedralMesh::CalculateBoundingBox(const std::vector< Node< SPACE_DIM > * > &rNodes) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| CalculateDesignatedOwnershipOfBoundaryElement(unsigned faceIndex) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| CalculateDesignatedOwnershipOfElement(unsigned elementIndex) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| CalculateMaximumContainingElementsPerProcess() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| CalculateMaximumNodeConnectivityPerProcess() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| CalculateMinMaxEdgeLengths() | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| CalculateNodeExchange(std::vector< std::vector< unsigned > > &rNodesToSendPerProcess, std::vector< std::vector< unsigned > > &rNodesToReceivePerProcess) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| CheckOutwardNormals() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| ComputeMeshPartitioning(AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader, std::set< unsigned > &rNodesOwned, std::set< unsigned > &rHaloNodesOwned, std::set< unsigned > &rElementsOwned, std::vector< unsigned > &rProcessorsOffset) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| ConstructCuboid(unsigned width, unsigned height, unsigned depth) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ConstructFromMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > &rOtherMesh) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| ConstructFromMeshReader(AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ConstructLinearMesh(unsigned width) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ConstructRectangularMesh(unsigned width, unsigned height, bool stagger=true) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ConstructRegularSlabMesh(double spaceStep, double width, double height=0, double depth=0) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| ConstructRegularSlabMeshWithDimensionSplit(unsigned dimension, double spaceStep, double width, double height=0, double depth=0) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| DistributedTetrahedralMesh(DistributedTetrahedralMeshPartitionType::type partitioningMethod=DistributedTetrahedralMeshPartitionType::PARMETIS_LIBRARY) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetBoundaryElement(unsigned index) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetBoundaryElementIteratorBegin() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetBoundaryElementIteratorEnd() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetBoundaryNodeIteratorBegin() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetBoundaryNodeIteratorEnd() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetContainingElementIndex(const ChastePoint< SPACE_DIM > &rTestPoint, bool strict=false, std::set< unsigned > testElements=std::set< unsigned >(), bool onlyTryWithTestElements=false) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetDistanceBetweenNodes(unsigned indexA, unsigned indexB) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetDistributedVectorFactory() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetElement(unsigned index) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetElementIteratorBegin(bool skipDeletedElements=true) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | inline |
| GetElementIteratorEnd() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | inline |
| GetHaloNodeIndices(std::vector< unsigned > &rHaloIndices) const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetHaloNodeIteratorBegin() const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetHaloNodeIteratorEnd() const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetInverseJacobianForElement(unsigned elementIndex, c_matrix< double, SPACE_DIM, ELEMENT_DIM > &rJacobian, double &rJacobianDeterminant, c_matrix< double, ELEMENT_DIM, SPACE_DIM > &rInverseJacobian) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetMaximumNodeIndex() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetMeshFileBaseName() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNearestElementIndexFromTestElements(const ChastePoint< SPACE_DIM > &rTestPoint, std::set< unsigned > testElements) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNearestNodeIndex(const ChastePoint< SPACE_DIM > &rTestPoint) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNode(unsigned index) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNodeFromPrePermutationIndex(unsigned index) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNodeIteratorBegin(bool skipDeletedNodes=true) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | inline |
| GetNodeIteratorEnd() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | inline |
| GetNodeOrHaloNode(unsigned index) const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNumAllBoundaryElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNumAllElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNumAllNodes() const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNumBoundaryElements() const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNumBoundaryNodes() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNumCableElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNumElements() const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNumHaloNodes() const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNumLocalBoundaryElements() const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNumLocalElements() const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNumLocalNodes() const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNumNodeAttributes() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetNumNodes() const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetNumVertices() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetPartitionType() const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetProcessRegion() | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| GetVectorFromAtoB(const c_vector< double, SPACE_DIM > &rLocationA, const c_vector< double, SPACE_DIM > &rLocationB) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetWeightedDirectionForBoundaryElement(unsigned elementIndex, c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| GetWidth(const unsigned &rDimension) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| HaloNodeIterator typedef | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| IsMeshChanging() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| IsMeshOnDisk() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| mBoundaryElements | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mBoundaryElementsMapping | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| mBoundaryNodes | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mElements | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mElementsMapping | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| mHaloNodes | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| mHaloNodesMapping | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| mMeshChangesDuringSimulation | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mMeshFileBaseName | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mMeshIsLinear | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mMetisPartitioning | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| mNodePermutation | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mNodes | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mNodesMapping | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| mpDistributedVectorFactory | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
| mpSpaceRegion | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| mTotalNumBoundaryElements | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| mTotalNumElements | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| mTotalNumNodes | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| ParMetisLibraryNodeAndElementPartitioning(AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader, std::set< unsigned > &rElementsOwned, std::set< unsigned > &rNodesOwned, std::set< unsigned > &rHaloNodesOwned, std::vector< unsigned > &rProcessorsOffset) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| PermuteNodes() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ReadNodesPerProcessorFile(const std::string &rNodesPerProcessorFile) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| RefreshMesh() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| RegisterBoundaryElement(unsigned index) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| RegisterElement(unsigned index) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| RegisterHaloNode(unsigned index) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| RegisterNode(unsigned index) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| ReorderNodes() | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | private |
| rGetNodePermutation() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| Rotate(c_matrix< double, SPACE_DIM, SPACE_DIM > rotationMatrix) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| AbstractTetrahedralMesh::Rotate(c_vector< double, 3 > axis, double angle) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| AbstractTetrahedralMesh::Rotate(double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| RotateX(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| RotateY(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| RotateZ(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| Scale(const double xFactor=1.0, const double yFactor=1.0, const double zFactor=1.0) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| serialize(Archive &archive, const unsigned int version) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | inlineprivate |
| SetDistributedVectorFactory(DistributedVectorFactory *pFactory) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| SetElementOwnerships() | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | privatevirtual |
| SetMeshHasChangedSinceLoading() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| SetProcessRegion(ChasteCuboid< SPACE_DIM > *pRegion) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| SolveBoundaryElementMapping(unsigned index) const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protectedvirtual |
| SolveElementMapping(unsigned index) const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protectedvirtual |
| SolveNodeMapping(unsigned index) const | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protectedvirtual |
| TestDistributedQuadraticMesh (defined in DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | friend |
| TestDistributedTetrahedralMesh (defined in DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | friend |
| Translate(const c_vector< double, SPACE_DIM > &rDisplacement) | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| AbstractTetrahedralMesh::Translate(const double xMovement=0.0, const double yMovement=0.0, const double zMovement=0.0) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| ~AbstractMesh() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ~AbstractTetrahedralMesh() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
| ~DistributedTetrahedralMesh() | DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
1.8.6