Chaste  Release::3.4
Hdf5DataWriter Member List

This is the complete list of members for Hdf5DataWriter, including all inherited members.

AbstractHdf5Access(const std::string &rDirectory, const std::string &rBaseName, const std::string &rDatasetName, bool makeAbsolute=true)AbstractHdf5Access
AbstractHdf5Access(const FileFinder &rDirectory, const std::string &rBaseName, const std::string &rDatasetName)AbstractHdf5Access
AdvanceAlongUnlimitedDimension()Hdf5DataWriter
ApplyPermutation(const std::vector< unsigned > &rPermutation, bool unsafeExtendingMode=false)Hdf5DataWriter
CalculateChunkDims(unsigned targetSize, unsigned *pChunkSizeInBytes, bool *pAllOneChunk)Hdf5DataWriterprivate
CalculateNumberOfChunks()Hdf5DataWriterprivate
CheckUnitsName(const std::string &rName)Hdf5DataWriterprivate
CheckVariableName(const std::string &rName)Hdf5DataWriterprivate
Close()Hdf5DataWriter
ComputeIncompleteOffset()Hdf5DataWriterprivate
DATASET_DIMSAbstractHdf5Accessprotectedstatic
DefineFixedDimension(long dimensionSize)Hdf5DataWriter
DefineFixedDimension(const std::vector< unsigned > &rNodesToOuput, long vecSize)Hdf5DataWriter
DefineFixedDimensionUsingMatrix(const std::vector< unsigned > &rNodesToOuput, long vecSize)Hdf5DataWriter
DefineUnlimitedDimension(const std::string &rVariableName, const std::string &rVariableUnits, unsigned estimatedLength=1)Hdf5DataWriter
DefineVariable(const std::string &rVariableName, const std::string &rVariableUnits)Hdf5DataWriter
DoesDatasetExist(const std::string &rDatasetName)AbstractHdf5Accessprotected
EmptyDataset()Hdf5DataWriter
EndDefineMode()Hdf5DataWritervirtual
GetIncompleteNodeMap()AbstractHdf5Access
GetUnlimitedDimensionName()AbstractHdf5Access
GetUnlimitedDimensionUnit()AbstractHdf5Access
GetVariableByName(const std::string &rVariableName)Hdf5DataWriter
Hdf5DataWriter(DistributedVectorFactory &rVectorFactory, const std::string &rDirectory, const std::string &rBaseName, bool cleanDirectory=true, bool extendData=false, std::string datasetName="Data")Hdf5DataWriter
IsDataComplete()AbstractHdf5Access
IsInDefineMode()Hdf5DataWriter
mBaseNameAbstractHdf5Accessprotected
mChunkSizeHdf5DataWriterprivate
mCleanDirectoryHdf5DataWriterprivate
mCurrentTimeStepHdf5DataWriterprivate
mDataFixedDimensionSizeHdf5DataWriterprivate
mDatasetDimsAbstractHdf5Accessprotected
mDatasetNameAbstractHdf5Accessprotected
mDirectoryAbstractHdf5Accessprotected
mDoubleIncompleteOutputMatrixHdf5DataWriterprivate
mDoublePermutationHdf5DataWriterprivate
mEstimatedUnlimitedLengthHdf5DataWriterprivate
mFileFixedDimensionSizeHdf5DataWriterprivate
mFileIdAbstractHdf5Accessprotected
mFixedChunkSizeHdf5DataWriterprivate
mHiHdf5DataWriterprivate
mIncompleteNodeIndicesAbstractHdf5Accessprotected
mIsDataCompleteAbstractHdf5Accessprotected
mIsFixedDimensionSetHdf5DataWriterprivate
mIsInDefineModeHdf5DataWriterprivate
mIsUnlimitedDimensionSetAbstractHdf5Accessprotected
mLoHdf5DataWriterprivate
mNeedExtendHdf5DataWriterprivate
mNumberOfChunksHdf5DataWriterprivate
mNumberOwnedHdf5DataWriterprivate
mOffsetHdf5DataWriterprivate
mrVectorFactoryHdf5DataWriterprivate
mSingleIncompleteOutputMatrixHdf5DataWriterprivate
mSinglePermutationHdf5DataWriterprivate
mUnlimitedDatasetIdAbstractHdf5Accessprotected
mUnlimitedDimensionNameAbstractHdf5Accessprotected
mUnlimitedDimensionUnitAbstractHdf5Accessprotected
mUseExistingFileHdf5DataWriterprivate
mUseMatrixForIncompleteDataHdf5DataWriterprivate
mUseOptimalChunkSizeAlgorithmHdf5DataWriterprivate
mVariablesHdf5DataWriterprivate
mVariablesDatasetIdAbstractHdf5Accessprotected
OpenFile()Hdf5DataWriterprivate
PossiblyExtend()Hdf5DataWriter
PutStripedVector(std::vector< int > variableIDs, Vec petscVector)Hdf5DataWriter
PutUnlimitedVariable(double value)Hdf5DataWriter
PutVector(int variableID, Vec petscVector)Hdf5DataWriter
SetChunkSize()Hdf5DataWriterprivate
SetFixedChunkSize(const unsigned &rTimestepsPerChunk, const unsigned &rNodesPerChunk, const unsigned &rVariablesPerChunk)Hdf5DataWriter
SetMainDatasetRawChunkCache()AbstractHdf5Accessprotected
SetUnlimitedDatasetId()AbstractHdf5Accessprotected
~AbstractHdf5Access()AbstractHdf5Accessvirtual
~Hdf5DataWriter()Hdf5DataWritervirtual