Chaste  Release::3.4
NhsModelWithBackwardSolver Member List

This is the complete list of members for NhsModelWithBackwardSolver, including all inherited members.

AbstractContractionModel()AbstractContractionModelinline
AbstractOdeBasedContractionModel(unsigned numStateVariables)AbstractOdeBasedContractionModelinline
AbstractOdeSystem(unsigned numberOfStateVariables)AbstractOdeSystem
AbstractParameterisedSystem(unsigned numberOfStateVariables)AbstractParameterisedSystem< std::vector< double > >
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables)AbstractUntemplatedParameterisedSystem
CalculateBackwardEulerResidual(double calciumTroponin, double z, double Q, double &residualComponent1, double &residualComponent2)NhsModelWithBackwardSolverprivate
CalculateCalciumTrop50()NhsContractionModelprotected
CalculateCaTropAndZDerivatives(double calciumTroponin, double z, double Q, double &dCaTrop, double &dz)NhsModelWithBackwardSolverprivate
CalculateRootFunction(double time, const std::vector< double > &rY)AbstractOdeSystemvirtual
CalculateStoppingEvent(double time, const std::vector< double > &rY)AbstractOdeSystemvirtual
CalculateT0(double z)NhsContractionModelprotected
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames)AbstractParameterisedSystem< std::vector< double > >protected
ComputeDerivedQuantities(double time, const std::vector< double > &rState)AbstractParameterisedSystem< std::vector< double > >virtual
ComputeDerivedQuantitiesFromCurrentState(double time)AbstractParameterisedSystem< std::vector< double > >
DumpState(const std::string &rMessage)AbstractParameterisedSystem< std::vector< double > >protected
DumpState(const std::string &rMessage, std::vector< double >Y)AbstractParameterisedSystem< std::vector< double > >protected
DumpState(const std::string &rMessage, std::vector< double >Y, double time)AbstractParameterisedSystem< std::vector< double > >protected
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY)NhsContractionModelvirtual
GetActiveTension()NhsContractionModelvirtual
GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariableIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetAttribute(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetCalciumTroponinValue()NhsContractionModel
GetDerivedQuantityIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetDerivedQuantityUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetInitialConditions() constAbstractParameterisedSystem< std::vector< double > >
GetNextActiveTension()NhsModelWithBackwardSolvervirtual
GetNumberOfAttributes() const AbstractUntemplatedParameterisedSystem
GetNumberOfDerivedQuantities() const AbstractUntemplatedParameterisedSystem
GetNumberOfParameters() const AbstractUntemplatedParameterisedSystem
GetNumberOfStateVariables() const AbstractUntemplatedParameterisedSystem
GetParameter(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetParameter(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetParameterIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetParameterUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetStateVariable(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariable(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariableIndex(const std::string &rName) const AbstractUntemplatedParameterisedSystem
GetStateVariables()AbstractParameterisedSystem< std::vector< double > >
GetStateVariableUnits(unsigned index) const AbstractUntemplatedParameterisedSystem
GetSystemInformation() const AbstractUntemplatedParameterisedSystem
GetSystemName() const AbstractUntemplatedParameterisedSystem
GetUseAnalyticJacobian()AbstractOdeSystem
HasAnyVariable(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasAttribute(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasDerivedQuantity(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasParameter(const std::string &rName) const AbstractUntemplatedParameterisedSystem
HasStateVariable(const std::string &rName) const AbstractUntemplatedParameterisedSystem
ImplicitSolveForQ()NhsModelWithBackwardSolverprivate
IsStretchDependent()NhsContractionModelinlinevirtual
IsStretchRateDependent()NhsContractionModelinlinevirtual
mANhsContractionModelprotectedstatic
mA1NhsContractionModelprotectedstatic
mA2NhsContractionModelprotectedstatic
mA3NhsContractionModelprotectedstatic
mAlpha0NhsContractionModelprotectedstatic
mAlpha1NhsContractionModelprotectedstatic
mAlpha2NhsContractionModelprotectedstatic
mAlpha3NhsContractionModelprotectedstatic
mAlphaR1NhsContractionModelprotectedstatic
mAlphaR2NhsContractionModelprotectedstatic
mBeta0NhsContractionModelprotectedstatic
mBeta1NhsContractionModelprotectedstatic
mCalcium50refNhsContractionModelprotectedstatic
mCalciumINhsContractionModelprotected
mCalciumTrop50NhsContractionModelprotected
mCalciumTroponinMaxNhsContractionModelprotectedstatic
mDLambdaDtNhsContractionModelprotected
mDtNhsModelWithBackwardSolverprivate
mGammaNhsContractionModelprotectedstatic
mK1NhsContractionModelprotected
mK2NhsContractionModelprotected
mKonNhsContractionModelprotectedstatic
mKrefoffNhsContractionModelprotectedstatic
mKZNhsContractionModelprotectedstatic
mLambdaNhsContractionModelprotected
mNNhsContractionModelprotectedstatic
mNrNhsContractionModelprotectedstatic
mNumberOfStateVariablesAbstractUntemplatedParameterisedSystemprotected
mParametersAbstractParameterisedSystem< std::vector< double > >protected
mpSystemInfoAbstractUntemplatedParameterisedSystemprotected
mStateVariablesAbstractParameterisedSystem< std::vector< double > >protected
mTemporaryStateVariablesAbstractOdeBasedContractionModelprotected
mTimeAbstractOdeBasedContractionModelprotected
mToleranceNhsModelWithBackwardSolverprivatestatic
mTrefNhsContractionModelprotectedstatic
mUseAnalyticJacobianAbstractOdeSystemprotected
mZpNhsContractionModelprotectedstatic
NhsContractionModel()NhsContractionModel
NhsModelWithBackwardSolver()NhsModelWithBackwardSolver
ResetToInitialConditions()AbstractParameterisedSystem< std::vector< double > >virtual
rGetConstStateVariables() const AbstractOdeSystem
rGetDerivedQuantityNames() const AbstractUntemplatedParameterisedSystem
rGetDerivedQuantityUnits() const AbstractUntemplatedParameterisedSystem
rGetParameterNames() const AbstractUntemplatedParameterisedSystem
rGetParameterUnits() const AbstractUntemplatedParameterisedSystem
rGetStateVariableNames() const AbstractUntemplatedParameterisedSystem
rGetStateVariables()AbstractParameterisedSystem< std::vector< double > >
rGetStateVariableUnits() const AbstractUntemplatedParameterisedSystem
RunAndUpdate(double startTime, double endTime, double timestep)NhsModelWithBackwardSolvervirtual
RunDoNotUpdate(double startTime, double endTime, double timestep)NhsModelWithBackwardSolvervirtual
SetAnyVariable(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetAnyVariable(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialCondition(unsigned index, double initialCondition)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions)AbstractParameterisedSystem< std::vector< double > >
SetInputParameters(ContractionModelInputParameters &rInputParameters)NhsContractionModelvirtual
SetIntracellularCalciumConcentration(double calciumConcentration)NhsContractionModel
SetParameter(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetParameter(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(unsigned index, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(const std::string &rName, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariables(const std::vector< double > &rStateVariables)AbstractParameterisedSystem< std::vector< double > >
SetStretch(double stretch)AbstractContractionModelinline
SetStretchAndStretchRate(double lambda, double dlambdaDt)NhsContractionModelvirtual
UpdateStateVariables()AbstractOdeBasedContractionModelinlinevirtual
VerifyStateVariables()AbstractParameterisedSystem< std::vector< double > >inlinevirtual
~AbstractContractionModel()AbstractContractionModelinlinevirtual
~AbstractOdeSystem()AbstractOdeSystemvirtual
~AbstractUntemplatedParameterisedSystem()AbstractUntemplatedParameterisedSystemvirtual