| AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | protected |
| AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| AbstractCentreBasedCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh) | AbstractCentreBasedCellPopulation< DIM > | protected |
| AbstractCentreBasedCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCentreBasedCellPopulation< DIM > | |
| AbstractOffLatticeCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh) | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| AbstractOffLatticeCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< DIM, DIM > > pCellWriter, CellPtr pCell) | NodeBasedCellPopulation< DIM > | virtual |
| AbstractCentreBasedCellPopulation< DIM >::AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter, CellPtr pCell)=0 | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | pure virtual |
| AcceptCellWritersAcrossPopulation() | AbstractCentreBasedCellPopulation< DIM > | protectedvirtual |
| AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< DIM, DIM > > pPopulationCountWriter) | NodeBasedCellPopulation< DIM > | virtual |
| AbstractCentreBasedCellPopulation< DIM >::AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationCountWriter)=0 | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | pure virtual |
| AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< DIM, DIM > > pPopulationWriter) | NodeBasedCellPopulation< DIM > | virtual |
| AbstractCentreBasedCellPopulation< DIM >::AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter)=0 | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | pure virtual |
| AddCell(CellPtr pNewCell, const c_vector< double, DIM > &rCellDivisionVector, CellPtr pParentCell) | NodeBasedCellPopulation< DIM > | virtual |
| AbstractCentreBasedCellPopulation< DIM >::AddCell(CellPtr pNewCell, const c_vector< double, ELEMENT_DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr()) | AbstractCentreBasedCellPopulation< DIM > | |
| AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM >::AddCell(CellPtr pNewCell, const c_vector< double, SPACE_DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr())=0 | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | pure virtual |
| AddCellPopulationCountWriter() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | inline |
| AddCellPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pCellPopulationCountWriter) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | inline |
| AddCellsToSendLeft(std::vector< unsigned > &cellLocationIndices) | NodeBasedCellPopulation< DIM > | private |
| AddCellsToSendRight(std::vector< unsigned > &cellLocationIndices) | NodeBasedCellPopulation< DIM > | private |
| AddCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | virtual |
| AddCellWriter() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | inline |
| AddCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | inline |
| AddHaloCell(CellPtr pCell, boost::shared_ptr< Node< DIM > > pNode) | NodeBasedCellPopulation< DIM > | private |
| AddMovedCell(CellPtr pCell, boost::shared_ptr< Node< DIM > > pNode) | NodeBasedCellPopulation< DIM > | private |
| AddNode(Node< DIM > *pNewNode) | NodeBasedCellPopulation< DIM > | private |
| AbstractCentreBasedCellPopulation< DIM >::AddNode(Node< SPACE_DIM > *pNewNode)=0 | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | pure virtual |
| AddNodeAndCellToSendLeft(unsigned nodeIndex) | NodeBasedCellPopulation< DIM > | private |
| AddNodeAndCellToSendRight(unsigned nodeIndex) | NodeBasedCellPopulation< DIM > | private |
| AddPopulationWriter() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | inline |
| AddPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | inline |
| AddReceivedCells() | NodeBasedCellPopulation< DIM > | |
| AddReceivedHaloCells() | NodeBasedCellPopulation< DIM > | private |
| Begin() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| boost::serialization::access class | NodeBasedCellPopulation< DIM > | friend |
| Clear() | NodeBasedCellPopulation< DIM > | |
| CloseWritersFiles() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| CreateCellPair(CellPtr pCell1, CellPtr pCell2) | AbstractCentreBasedCellPopulation< DIM > | |
| CreateOrderedPair(unsigned index1, unsigned index2) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| DeleteMovedCell(unsigned index) | NodeBasedCellPopulation< DIM > | private |
| End() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| GetAbsoluteMovementThreshold() | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetCellAncestors() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| GetCellCyclePhaseCount() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| GetCellMutationStateCount() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| GetCellNodePair(unsigned nodeIndex) | NodeBasedCellPopulation< DIM > | |
| GetCellProliferativeTypeCount() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| GetCellPropertyRegistry() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| GetCellsUsingLocationIndex(unsigned index) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| GetCellUsingLocationIndex(unsigned index) | NodeBasedCellPopulation< DIM > | virtual |
| GetCentroidOfCellPopulation() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| GetDampingConstant(unsigned nodeIndex) | AbstractCentreBasedCellPopulation< DIM > | virtual |
| GetDampingConstantMutant() | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetDampingConstantNormal() | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetIdentifier() const | Identifiable | |
| GetLocationIndexUsingCell(CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| GetLocationOfCellCentre(CellPtr pCell) | AbstractCentreBasedCellPopulation< DIM > | virtual |
| GetMechanicsCutOffLength() | NodeBasedCellPopulation< DIM > | |
| GetMeinekeDivisionSeparation() | AbstractCentreBasedCellPopulation< DIM > | |
| GetNeighbouringLocationIndices(CellPtr pCell) | AbstractCentreBasedCellPopulation< DIM > | virtual |
| GetNeighbouringNodeIndices(unsigned index) | NodeBasedCellPopulation< DIM > | virtual |
| GetNode(unsigned index) | NodeBasedCellPopulation< DIM > | virtual |
| GetNodeCorrespondingToCell(CellPtr pCell) | AbstractCentreBasedCellPopulation< DIM > | |
| GetNodesWithinNeighbourhoodRadius(unsigned index, double neighbourhoodRadius) | NodeBasedCellPopulation< DIM > | |
| GetNumAllCells() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| GetNumNodes() | NodeBasedCellPopulation< DIM > | virtual |
| GetNumRealCells() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| GetOutputResultsForChasteVisualizer() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| GetReceivedCells() | NodeBasedCellPopulation< DIM > | |
| GetSizeOfCellPopulation() | NodeBasedCellPopulation< DIM > | |
| GetUseVariableRadii() | NodeBasedCellPopulation< DIM > | |
| GetVolumeOfCell(CellPtr pCell) | NodeBasedCellPopulation< DIM > | virtual |
| GetWidth(const unsigned &rDimension) | NodeBasedCellPopulation< DIM > | virtual |
| HasWriter() const | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | inline |
| InitialiseCells() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| IsCellAssociatedWithADeletedLocation(CellPtr pCell) | AbstractCentreBasedCellPopulation< DIM > | virtual |
| IsCellAttachedToLocationIndex(unsigned index) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| IsGhostNode(unsigned index) | AbstractCentreBasedCellPopulation< DIM > | virtual |
| IsMarkedSpring(const std::pair< CellPtr, CellPtr > &rCellPair) | AbstractCentreBasedCellPopulation< DIM > | |
| IsParticle(unsigned index) | AbstractCentreBasedCellPopulation< DIM > | virtual |
| IsRoomToDivide(CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | virtual |
| mAbsoluteMovementThreshold | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| MarkSpring(std::pair< CellPtr, CellPtr > &rCellPair) | AbstractCentreBasedCellPopulation< DIM > | |
| mCellCommunicationTag | NodeBasedCellPopulation< DIM > | privatestatic |
| mCellLocationMap | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | protected |
| mCellPopulationCountWriters | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | protected |
| mCellPopulationWriters | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | protected |
| mCells | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | protected |
| mCellsToSendLeft | NodeBasedCellPopulation< DIM > | private |
| mCellsToSendRight | NodeBasedCellPopulation< DIM > | private |
| mCellWriters | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | protected |
| mCentroid | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | protected |
| mDampingConstantMutant | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mDampingConstantNormal | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mDeleteMesh | NodeBasedCellPopulation< DIM > | private |
| mHaloCellLocationMap | NodeBasedCellPopulation< DIM > | private |
| mHaloCells | NodeBasedCellPopulation< DIM > | private |
| mLeftCommunicator | NodeBasedCellPopulation< DIM > | private |
| mLoadBalanceFrequency | NodeBasedCellPopulation< DIM > | private |
| mLoadBalanceMesh | NodeBasedCellPopulation< DIM > | private |
| mLocationCellMap | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | protected |
| mLocationHaloCellMap | NodeBasedCellPopulation< DIM > | private |
| mMarkedSprings | AbstractCentreBasedCellPopulation< DIM > | protected |
| mMaxSpatialPositions | NodeBasedCellPopulation< DIM > | private |
| mMeinekeDivisionSeparation | AbstractCentreBasedCellPopulation< DIM > | protected |
| mMinSpatialPositions | NodeBasedCellPopulation< DIM > | private |
| mNodeNeighbours | NodeBasedCellPopulation< DIM > | private |
| mNodePairs | NodeBasedCellPopulation< DIM > | private |
| mOutputResultsForChasteVisualizer | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | protected |
| MoveCellInLocationMap(CellPtr pCell, unsigned old_index, unsigned new_index) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| mpCellPropertyRegistry | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | protected |
| mpCellsRecvLeft | NodeBasedCellPopulation< DIM > | private |
| mpCellsRecvRight | NodeBasedCellPopulation< DIM > | private |
| mpNodesOnlyMesh | NodeBasedCellPopulation< DIM > | protected |
| mpVtkMetaFile | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | protected |
| mRightCommunicator | NodeBasedCellPopulation< DIM > | private |
| mrMesh | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | protected |
| mUseVariableRadii | NodeBasedCellPopulation< DIM > | private |
| NodeBasedCellPopulation(NodesOnlyMesh< DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false, bool validate=true) | NodeBasedCellPopulation< DIM > | |
| NodeBasedCellPopulation(NodesOnlyMesh< DIM > &rMesh) | NodeBasedCellPopulation< DIM > | |
| NonBlockingSendCellsToNeighbourProcesses() | NodeBasedCellPopulation< DIM > | |
| OpenWritersFiles(OutputFileHandler &rOutputFileHandler) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | virtual |
| OutputCellPopulationInfo(out_stream &rParamsFile) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| OutputCellPopulationParameters(out_stream &rParamsFile) | NodeBasedCellPopulation< DIM > | virtual |
| RefreshHaloCells() | NodeBasedCellPopulation< DIM > | private |
| RemoveCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | virtual |
| RemoveDeadCells() | NodeBasedCellPopulation< DIM > | virtual |
| rGetCells() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| rGetMesh() | NodeBasedCellPopulation< DIM > | |
| rGetMesh() const | NodeBasedCellPopulation< DIM > | |
| rGetNodePairs() | NodeBasedCellPopulation< DIM > | virtual |
| SendCellsToNeighbourProcesses() | NodeBasedCellPopulation< DIM > | |
| serialize(Archive &archive, const unsigned int version) | NodeBasedCellPopulation< DIM > | inlineprivate |
| SetAbsoluteMovementThreshold(double absoluteMovementThreshold) | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetCellAncestorsToLocationIndices() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| SetCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| SetDampingConstantMutant(double dampingConstantMutant) | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetDampingConstantNormal(double dampingConstantNormal) | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetDataOnAllCells(const std::string &rDataName, double dataValue) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| SetDefaultCellMutationStateAndProliferativeTypeOrdering() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| SetLoadBalanceFrequency(unsigned loadBalanceFrequency) | NodeBasedCellPopulation< DIM > | |
| SetLoadBalanceMesh(bool loadBalanceMesh) | NodeBasedCellPopulation< DIM > | |
| SetMeinekeDivisionSeparation(double divisionSeparation) | AbstractCentreBasedCellPopulation< DIM > | |
| SetNode(unsigned nodeIndex, ChastePoint< DIM > &rNewLocation) | NodeBasedCellPopulation< DIM > | |
| AbstractCentreBasedCellPopulation< DIM >::SetNode(unsigned nodeIndex, ChastePoint< SPACE_DIM > &rNewLocation)=0 | AbstractOffLatticeCellPopulation< ELEMENT_DIM, ELEMENT_DIM > | pure virtual |
| SetOutputResultsForChasteVisualizer(bool outputResultsForChasteVisualizer) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | |
| SetUseVariableRadii(bool useVariableRadii=true) | NodeBasedCellPopulation< DIM > | |
| TestBoxCollection (defined in NodeBasedCellPopulation< DIM >) | NodeBasedCellPopulation< DIM > | friend |
| TestNodeBasedCellPopulation (defined in NodeBasedCellPopulation< DIM >) | NodeBasedCellPopulation< DIM > | friend |
| TestNodeBasedCellPopulationParallelMethods (defined in NodeBasedCellPopulation< DIM >) | NodeBasedCellPopulation< DIM > | friend |
| UnmarkSpring(std::pair< CellPtr, CellPtr > &rCellPair) | AbstractCentreBasedCellPopulation< DIM > | |
| Update(bool hasHadBirthsOrDeaths=true) | NodeBasedCellPopulation< DIM > | virtual |
| UpdateCellProcessLocation() | NodeBasedCellPopulation< DIM > | virtual |
| UpdateMapsAfterRemesh(NodeMap &map) | NodeBasedCellPopulation< DIM > | private |
| UpdateNodeLocations(double dt) | AbstractCentreBasedCellPopulation< DIM > | virtual |
| UpdateParticlesAfterReMesh(NodeMap &rMap) | NodeBasedCellPopulation< DIM > | protectedvirtual |
| Validate() | NodeBasedCellPopulation< DIM > | protectedvirtual |
| WriteResultsToFiles(const std::string &rDirectory) | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | virtual |
| WriteVtkResultsToFile(const std::string &rDirectory) | NodeBasedCellPopulation< DIM > | privatevirtual |
| ~AbstractCellPopulation() | AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > | virtual |
| ~Identifiable() | Identifiable | virtual |
| ~NodeBasedCellPopulation() | NodeBasedCellPopulation< DIM > | virtual |
1.8.6