Chaste  Release::3.4
OnLatticeSimulation< DIM > Member List

This is the complete list of members for OnLatticeSimulation< DIM >, including all inherited members.

AbstractCellBasedSimulation(AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true)AbstractCellBasedSimulation< DIM >
AddCaSwitchingUpdateRule(boost::shared_ptr< AbstractCaSwitchingUpdateRule< DIM > > pUpdateRule)OnLatticeSimulation< DIM >
AddCaUpdateRule(boost::shared_ptr< AbstractCaUpdateRule< DIM > > pUpdateRule)OnLatticeSimulation< DIM >
AddCellKiller(boost::shared_ptr< AbstractCellKiller< ELEMENT_DIM > > pCellKiller)AbstractCellBasedSimulation< DIM >
AddPottsUpdateRule(boost::shared_ptr< AbstractPottsUpdateRule< DIM > > pUpdateRule)OnLatticeSimulation< DIM >
AddSimulationModifier(boost::shared_ptr< AbstractCellBasedSimulationModifier< ELEMENT_DIM, ELEMENT_DIM > > pSimulationModifier)AbstractCellBasedSimulation< DIM >
boost::serialization::access classOnLatticeSimulation< DIM >friend
CalculateCellDivisionVector(CellPtr pParentCell)OnLatticeSimulation< DIM >protectedvirtual
DoCellBirth()AbstractCellBasedSimulation< DIM >protectedvirtual
DoCellRemoval()AbstractCellBasedSimulation< DIM >protected
GetCellBasedPdeHandler()AbstractCellBasedSimulation< DIM >
GetDt()AbstractCellBasedSimulation< DIM >
GetIdentifier() const Identifiable
GetNodeLocation(const unsigned &rNodeIndex)AbstractCellBasedSimulation< DIM >
GetNumBirths()AbstractCellBasedSimulation< DIM >
GetNumDeaths()AbstractCellBasedSimulation< DIM >
GetOutputCellVelocities()AbstractCellBasedSimulation< DIM >
GetOutputDirectory()AbstractCellBasedSimulation< DIM >
GetOutputDivisionLocations()AbstractCellBasedSimulation< DIM >
GetSimulationModifiers()AbstractCellBasedSimulation< DIM >
GetUpdateCellPopulationRule()AbstractCellBasedSimulation< DIM >
mCellKillersAbstractCellBasedSimulation< DIM >protected
mDeleteCellPopulationInDestructorAbstractCellBasedSimulation< DIM >protected
mDtAbstractCellBasedSimulation< DIM >protected
mEndTimeAbstractCellBasedSimulation< DIM >protected
mInitialiseCellsAbstractCellBasedSimulation< DIM >protected
mNoBirthAbstractCellBasedSimulation< DIM >protected
mNumBirthsAbstractCellBasedSimulation< DIM >protected
mNumDeathsAbstractCellBasedSimulation< DIM >protected
mOutputCellVelocitiesAbstractCellBasedSimulation< DIM >protected
mOutputDirectoryAbstractCellBasedSimulation< DIM >protected
mOutputDivisionLocationsAbstractCellBasedSimulation< DIM >protected
mpCellBasedPdeHandlerAbstractCellBasedSimulation< DIM >protected
mpCellVelocitiesFileAbstractCellBasedSimulation< DIM >protected
mpDivisionLocationFileAbstractCellBasedSimulation< DIM >protected
mpVizSetupFileAbstractCellBasedSimulation< DIM >protected
mrCellPopulationAbstractCellBasedSimulation< DIM >protected
mSamplingTimestepMultipleAbstractCellBasedSimulation< DIM >protected
mSimulationModifiersAbstractCellBasedSimulation< DIM >protected
mSimulationOutputDirectoryAbstractCellBasedSimulation< DIM >protected
mUpdateCellPopulationAbstractCellBasedSimulation< DIM >protected
OnLatticeSimulation(AbstractCellPopulation< DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true)OnLatticeSimulation< DIM >
OutputAdditionalSimulationSetup(out_stream &rParamsFile)OnLatticeSimulation< DIM >virtual
OutputSimulationParameters(out_stream &rParamsFile)OnLatticeSimulation< DIM >virtual
OutputSimulationSetup()AbstractCellBasedSimulation< DIM >protected
RemoveAllCaSwitchingUpdateRules()OnLatticeSimulation< DIM >
RemoveAllCaUpdateRules()OnLatticeSimulation< DIM >
RemoveAllCellKillers()AbstractCellBasedSimulation< DIM >
RemoveAllPottsUpdateRules()OnLatticeSimulation< DIM >
rGetCellPopulation()AbstractCellBasedSimulation< DIM >
rGetCellPopulation() constAbstractCellBasedSimulation< DIM >
serialize(Archive &archive, const unsigned int version)OnLatticeSimulation< DIM >inlineprivate
SetCellBasedPdeHandler(CellBasedPdeHandler< ELEMENT_DIM > *pCellBasedPdeHandler)AbstractCellBasedSimulation< DIM >
SetDt(double dt)AbstractCellBasedSimulation< DIM >
SetEndTime(double endTime)AbstractCellBasedSimulation< DIM >
SetNoBirth(bool noBirth)AbstractCellBasedSimulation< DIM >
SetOutputCellVelocities(bool outputCellVelocities)AbstractCellBasedSimulation< DIM >
SetOutputDirectory(std::string outputDirectory)AbstractCellBasedSimulation< DIM >
SetOutputDivisionLocations(bool outputDivisionLocations)AbstractCellBasedSimulation< DIM >
SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple)AbstractCellBasedSimulation< DIM >
SetUpdateCellPopulationRule(bool updateCellPopulation)AbstractCellBasedSimulation< DIM >
SetupSolve()AbstractCellBasedSimulation< DIM >inlineprotectedvirtual
Solve()AbstractCellBasedSimulation< DIM >
StoppingEventHasOccurred()AbstractCellBasedSimulation< DIM >protectedvirtual
UpdateCellLocationsAndTopology()OnLatticeSimulation< DIM >protectedvirtual
UpdateCellPopulation()OnLatticeSimulation< DIM >protectedvirtual
WriteVisualizerSetupFile()OnLatticeSimulation< DIM >protectedvirtual
~AbstractCellBasedSimulation()AbstractCellBasedSimulation< DIM >virtual
~Identifiable()Identifiablevirtual