Chaste  Release::3.4
PottsBasedCellPopulation< DIM > Member List

This is the complete list of members for PottsBasedCellPopulation< DIM >, including all inherited members.

AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh)AbstractCellPopulation< DIM >protected
AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractCellPopulation< DIM >
AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh)AbstractOnLatticeCellPopulation< DIM >protected
AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false)AbstractOnLatticeCellPopulation< DIM >
AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< DIM, DIM > > pCellWriter, CellPtr pCell)PottsBasedCellPopulation< DIM >virtual
AbstractOnLatticeCellPopulation::AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, ELEMENT_DIM > > pCellWriter, CellPtr pCell)=0AbstractCellPopulation< DIM >pure virtual
AcceptCellWritersAcrossPopulation()AbstractCellPopulation< DIM >protectedvirtual
AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< DIM, DIM > > pPopulationCountWriter)PottsBasedCellPopulation< DIM >virtual
AbstractOnLatticeCellPopulation::AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, ELEMENT_DIM > > pPopulationCountWriter)=0AbstractCellPopulation< DIM >pure virtual
AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< DIM, DIM > > pPopulationWriter)PottsBasedCellPopulation< DIM >virtual
AbstractOnLatticeCellPopulation::AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, ELEMENT_DIM > > pPopulationWriter)=0AbstractCellPopulation< DIM >pure virtual
AddCell(CellPtr pNewCell, const c_vector< double, DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr())PottsBasedCellPopulation< DIM >
AbstractOnLatticeCellPopulation::AddCell(CellPtr pNewCell, const c_vector< double, ELEMENT_DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr())=0AbstractCellPopulation< DIM >pure virtual
AddCellPopulationCountWriter()AbstractCellPopulation< DIM >inline
AddCellPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, ELEMENT_DIM > > pCellPopulationCountWriter)AbstractCellPopulation< DIM >inline
AddCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< DIM >virtual
AddCellWriter()AbstractCellPopulation< DIM >inline
AddCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, ELEMENT_DIM > > pCellWriter)AbstractCellPopulation< DIM >inline
AddPopulationWriter()AbstractCellPopulation< DIM >inline
AddPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, ELEMENT_DIM > > pPopulationWriter)AbstractCellPopulation< DIM >inline
AddUpdateRule(boost::shared_ptr< AbstractPottsUpdateRule< DIM > > pUpdateRule)PottsBasedCellPopulation< DIM >
Begin()AbstractCellPopulation< DIM >
boost::serialization::access (defined in PottsBasedCellPopulation< DIM >)PottsBasedCellPopulation< DIM >friend
CloseWritersFiles()AbstractCellPopulation< DIM >
CreateElementTessellation()PottsBasedCellPopulation< DIM >
CreateMutableMesh()PottsBasedCellPopulation< DIM >
CreateOrderedPair(unsigned index1, unsigned index2)AbstractCellPopulation< DIM >
End()AbstractCellPopulation< DIM >
GetCellAncestors()AbstractCellPopulation< DIM >
GetCellCyclePhaseCount()AbstractCellPopulation< DIM >
GetCellMutationStateCount()AbstractCellPopulation< DIM >
GetCellProliferativeTypeCount()AbstractCellPopulation< DIM >
GetCellPropertyRegistry()AbstractCellPopulation< DIM >
GetCellsUsingLocationIndex(unsigned index)AbstractCellPopulation< DIM >
GetCellUsingLocationIndex(unsigned index)AbstractCellPopulation< DIM >virtual
GetCentroidOfCellPopulation()AbstractCellPopulation< DIM >
GetElement(unsigned elementIndex)PottsBasedCellPopulation< DIM >
GetElementCorrespondingToCell(CellPtr pCell)PottsBasedCellPopulation< DIM >
GetElementTessellation()PottsBasedCellPopulation< DIM >
GetIdentifier() const Identifiable
GetIterateRandomlyOverUpdateRuleCollection()AbstractOnLatticeCellPopulation< DIM >
GetLocationIndexUsingCell(CellPtr pCell)AbstractCellPopulation< DIM >
GetLocationOfCellCentre(CellPtr pCell)PottsBasedCellPopulation< DIM >virtual
GetMutableMesh()PottsBasedCellPopulation< DIM >
GetNeighbouringLocationIndices(CellPtr pCell)PottsBasedCellPopulation< DIM >virtual
GetNeighbouringNodeIndices(unsigned index)AbstractOnLatticeCellPopulation< DIM >virtual
GetNode(unsigned index)PottsBasedCellPopulation< DIM >virtual
GetNumAllCells()AbstractCellPopulation< DIM >
GetNumElements()PottsBasedCellPopulation< DIM >
GetNumNodes()PottsBasedCellPopulation< DIM >virtual
GetNumRealCells()AbstractCellPopulation< DIM >
GetNumSweepsPerTimestep()PottsBasedCellPopulation< DIM >
GetOutputResultsForChasteVisualizer()AbstractCellPopulation< DIM >
GetSizeOfCellPopulation()AbstractCellPopulation< DIM >
GetTemperature()PottsBasedCellPopulation< DIM >
GetUpdateNodesInRandomOrder()AbstractOnLatticeCellPopulation< DIM >
GetVolumeOfCell(CellPtr pCell)PottsBasedCellPopulation< DIM >virtual
GetWidth(const unsigned &rDimension)PottsBasedCellPopulation< DIM >virtual
HasWriter() constAbstractCellPopulation< DIM >inline
InitialiseCells()AbstractCellPopulation< DIM >
IsCellAssociatedWithADeletedLocation(CellPtr pCell)PottsBasedCellPopulation< DIM >virtual
IsCellAttachedToLocationIndex(unsigned index)AbstractCellPopulation< DIM >
IsRoomToDivide(CellPtr pCell)AbstractCellPopulation< DIM >virtual
mCellLocationMapAbstractCellPopulation< DIM >protected
mCellPopulationCountWritersAbstractCellPopulation< DIM >protected
mCellPopulationWritersAbstractCellPopulation< DIM >protected
mCellsAbstractCellPopulation< DIM >protected
mCellWritersAbstractCellPopulation< DIM >protected
mCentroidAbstractCellPopulation< DIM >protected
mDeleteMeshAbstractOnLatticeCellPopulation< DIM >protected
mIterateRandomlyOverUpdateRuleCollectionAbstractOnLatticeCellPopulation< DIM >protected
mLocationCellMapAbstractCellPopulation< DIM >protected
mNumSweepsPerTimestepPottsBasedCellPopulation< DIM >private
mOutputResultsForChasteVisualizerAbstractCellPopulation< DIM >protected
MoveCellInLocationMap(CellPtr pCell, unsigned old_index, unsigned new_index)AbstractCellPopulation< DIM >
mpCellPropertyRegistryAbstractCellPopulation< DIM >protected
mpElementTessellationPottsBasedCellPopulation< DIM >private
mpMutableMeshPottsBasedCellPopulation< DIM >private
mpPottsMeshPottsBasedCellPopulation< DIM >private
mpVtkMetaFileAbstractCellPopulation< DIM >protected
mrMeshAbstractCellPopulation< DIM >protected
mTemperaturePottsBasedCellPopulation< DIM >private
mUpdateNodesInRandomOrderAbstractOnLatticeCellPopulation< DIM >protected
mUpdateRuleCollectionPottsBasedCellPopulation< DIM >private
OpenWritersFiles(OutputFileHandler &rOutputFileHandler)PottsBasedCellPopulation< DIM >virtual
OutputCellPopulationInfo(out_stream &rParamsFile)AbstractCellPopulation< DIM >
OutputCellPopulationParameters(out_stream &rParamsFile)PottsBasedCellPopulation< DIM >virtual
PottsBasedCellPopulation(PottsMesh< DIM > &rMesh, std::vector< CellPtr > &rCells, bool deleteMesh=false, bool validate=true, const std::vector< unsigned > locationIndices=std::vector< unsigned >())PottsBasedCellPopulation< DIM >
PottsBasedCellPopulation(PottsMesh< DIM > &rMesh)PottsBasedCellPopulation< DIM >
RemoveAllUpdateRules()PottsBasedCellPopulation< DIM >
RemoveCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< DIM >virtual
RemoveDeadCells()PottsBasedCellPopulation< DIM >virtual
rGetCells()AbstractCellPopulation< DIM >
rGetMesh()PottsBasedCellPopulation< DIM >
rGetMesh() const PottsBasedCellPopulation< DIM >
rGetUpdateRuleCollection() const PottsBasedCellPopulation< DIM >
serialize(Archive &archive, const unsigned int version)PottsBasedCellPopulation< DIM >inlineprivate
SetCellAncestorsToLocationIndices()AbstractCellPopulation< DIM >
SetCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< DIM >
SetDataOnAllCells(const std::string &rDataName, double dataValue)AbstractCellPopulation< DIM >
SetDefaultCellMutationStateAndProliferativeTypeOrdering()AbstractCellPopulation< DIM >
SetIterateRandomlyOverUpdateRuleCollection(bool iterateRandomly)AbstractOnLatticeCellPopulation< DIM >
SetNode(unsigned index, ChastePoint< DIM > &rNewLocation)AbstractOnLatticeCellPopulation< DIM >
AbstractCellPopulation< DIM >::SetNode(unsigned nodeIndex, ChastePoint< ELEMENT_DIM > &rNewLocation)=0AbstractCellPopulation< DIM >pure virtual
SetNumSweepsPerTimestep(unsigned numSweepsPerTimestep)PottsBasedCellPopulation< DIM >
SetOutputResultsForChasteVisualizer(bool outputResultsForChasteVisualizer)AbstractCellPopulation< DIM >
SetTemperature(double temperature)PottsBasedCellPopulation< DIM >
SetUpdateNodesInRandomOrder(bool updateNodesInRandomOrder)AbstractOnLatticeCellPopulation< DIM >
TestPottsBasedCellPopulation (defined in PottsBasedCellPopulation< DIM >)PottsBasedCellPopulation< DIM >friend
Update(bool hasHadBirthsOrDeaths=true)PottsBasedCellPopulation< DIM >virtual
UpdateCellLocations(double dt)PottsBasedCellPopulation< DIM >virtual
UpdateCellProcessLocation()AbstractCellPopulation< DIM >virtual
Validate()PottsBasedCellPopulation< DIM >privatevirtual
WriteResultsToFiles(const std::string &rDirectory)PottsBasedCellPopulation< DIM >virtual
WriteVtkResultsToFile(const std::string &rDirectory)PottsBasedCellPopulation< DIM >privatevirtual
~AbstractCellPopulation()AbstractCellPopulation< DIM >virtual
~AbstractOnLatticeCellPopulation()AbstractOnLatticeCellPopulation< DIM >virtual
~Identifiable()Identifiablevirtual
~PottsBasedCellPopulation()PottsBasedCellPopulation< DIM >virtual