AbstractCellCycleModelOdeSolver.hpp

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*/
 
#ifndef ABSTRACTCELLCYCLEMODELODESOLVER_HPP_
#define ABSTRACTCELLCYCLEMODELODESOLVER_HPP_
 
#include "ChasteSerialization.hpp"
#include "ClassIsAbstract.hpp"
#include <boost/serialization/base_object.hpp>
 
#include <boost/shared_ptr.hpp>
 
#include "AbstractIvpOdeSolver.hpp"
 
class AbstractCellCycleModelOdeSolver
{
private:
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & mpOdeSolver;
        archive & mSizeOfOdeSystem;
    }
 
protected:
 
    boost::shared_ptr<AbstractIvpOdeSolver> mpOdeSolver;
 
    unsigned mSizeOfOdeSystem;
 
public:
 
    AbstractCellCycleModelOdeSolver();
 
    virtual ~AbstractCellCycleModelOdeSolver();
 
    virtual bool IsSetUp()=0;
 
    virtual void Reset()=0;
 
    void SolveAndUpdateStateVariable(AbstractOdeSystem* pAbstractOdeSystem,
                                     double startTime,
                                     double endTime,
                                     double timeStep);
 
    virtual void Initialise()=0;
 
    bool StoppingEventOccurred();
 
    double GetStoppingTime();
 
    void SetSizeOfOdeSystem(unsigned sizeOfOdeSystem);
 
    unsigned GetSizeOfOdeSystem();
 
    void CheckForStoppingEvents();
 
    void SetMaxSteps(long numSteps);
 
    void SetTolerances(double relTol=1e-4, double absTol=1e-6);
 
    virtual bool IsAdaptive();
};
 
#endif /*ABSTRACTCELLCYCLEMODELODESOLVER_HPP_*/