Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
AbstractCellCycleModelOdeSolver.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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10This file is part of Chaste.
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12Redistribution and use in source and binary forms, with or without
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14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
16 * Redistributions in binary form must reproduce the above copyright notice,
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19 * Neither the name of the University of Oxford nor the names of its
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21 software without specific prior written permission.
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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33
34*/
35
36#include "AbstractCellCycleModelOdeSolver.hpp"
37#include "CvodeAdaptor.hpp"
38
43
47
49 double startTime,
50 double endTime,
51 double timeStep)
52{
53 assert(IsSetUp());
54 mpOdeSolver->SolveAndUpdateStateVariable(pAbstractOdeSystem, startTime, endTime, timeStep);
55}
56
58{
59 assert(IsSetUp());
60 return mpOdeSolver->StoppingEventOccurred();
61}
62
64{
65 assert(IsSetUp());
66 return mpOdeSolver->GetStoppingTime();
67}
68
70{
71 mSizeOfOdeSystem = sizeOfOdeSystem;
72}
73
78
80{
81#ifdef CHASTE_CVODE
82 assert(IsSetUp());
83 if (boost::dynamic_pointer_cast<CvodeAdaptor>(mpOdeSolver))
84 {
85 (boost::static_pointer_cast<CvodeAdaptor>(mpOdeSolver))->CheckForStoppingEvents();
86 }
87#endif //CHASTE_CVODE
88}
89
91{
92#ifdef CHASTE_CVODE
93 assert(IsSetUp());
94 if (boost::dynamic_pointer_cast<CvodeAdaptor>(mpOdeSolver))
95 {
96 (boost::static_pointer_cast<CvodeAdaptor>(mpOdeSolver))->SetMaxSteps(numSteps);
97 }
98#endif //CHASTE_CVODE
99}
100
101void AbstractCellCycleModelOdeSolver::SetTolerances(double relTol, double absTol)
102{
103#ifdef CHASTE_CVODE
104 assert(IsSetUp());
105 if (boost::dynamic_pointer_cast<CvodeAdaptor>(mpOdeSolver))
106 {
107 (boost::static_pointer_cast<CvodeAdaptor>(mpOdeSolver))->SetTolerances(relTol, absTol);
108 }
109#endif //CHASTE_CVODE
110}
111
113{
114 bool adaptive = false;
115#ifdef CHASTE_CVODE
116 assert(IsSetUp());
117 if (boost::dynamic_pointer_cast<CvodeAdaptor>(mpOdeSolver))
118 {
119 adaptive = true;
120 }
121#endif //CHASTE_CVODE
122 return adaptive;
123}
const unsigned UNSIGNED_UNSET
Definition Exception.hpp:53
void SetSizeOfOdeSystem(unsigned sizeOfOdeSystem)
void SetTolerances(double relTol=1e-4, double absTol=1e-6)
boost::shared_ptr< AbstractIvpOdeSolver > mpOdeSolver
void SolveAndUpdateStateVariable(AbstractOdeSystem *pAbstractOdeSystem, double startTime, double endTime, double timeStep)