Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
AbstractConductivityTensors.cpp
1/*
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34*/
35
36#include "AbstractConductivityTensors.hpp"
37#include "Exception.hpp"
38#include <sstream>
39
40template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
42 : mpMesh(NULL),
43 mUseNonConstantConductivities(false),
44 mUseFibreOrientation(false),
45 mInitialised(false)
46{
47 double init_data[]={DBL_MAX, DBL_MAX, DBL_MAX};
48
49 for (unsigned dim=0; dim<SPACE_DIM; dim++)
50 {
51 mConstantConductivities[dim] = init_data[dim];
52 }
53}
54
55template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
57{
58}
59
60template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
62{
63 mUseFibreOrientation = true;
64 mFibreOrientationFile = rFibreOrientationFile;
65}
66
67template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
69{
70 if (SPACE_DIM != 1)
71 {
72 EXCEPTION("Wrong number of conductivities provided");
73 }
74
75 mUseNonConstantConductivities = false;
76 mConstantConductivities = constantConductivities;
77}
78
79template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
81{
82 if (SPACE_DIM != 2)
83 {
84 EXCEPTION("Wrong number of conductivities provided");
85 }
86
87 mUseNonConstantConductivities = false;
88 mConstantConductivities = constantConductivities;
89}
90
91template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
93{
94 if (SPACE_DIM != 3)
95 {
96 EXCEPTION("Wrong number of conductivities provided");
97 }
98
99 mUseNonConstantConductivities = false;
100 mConstantConductivities = constantConductivities;
101}
102
103template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
104void AbstractConductivityTensors<ELEMENT_DIM,SPACE_DIM>::SetNonConstantConductivities(std::vector<c_vector<double, SPACE_DIM> >* pNonConstantConductivities)
105{
106 mUseNonConstantConductivities = true;
107 mpNonConstantConductivities = pNonConstantConductivities;
108}
110template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
111c_matrix<double,SPACE_DIM,SPACE_DIM>& AbstractConductivityTensors<ELEMENT_DIM,SPACE_DIM>::operator[](const unsigned global_index)
112{
113 assert(mInitialised);
114 if (global_index >= this->mpMesh->GetNumElements() )
115 {
116 EXCEPTION("Conductivity tensor requested for element with global_index=" << global_index << ", but there are only " << this->mpMesh->GetNumElements() << " elements in the mesh.");
117 }
119 if (!mUseNonConstantConductivities && !mUseFibreOrientation)
120 {
121 return mTensors[0];
122 }
123 else
124 {
125 unsigned local_index = mpMesh->SolveElementMapping(global_index); //This will throw if we don't own the element
126 return mTensors[local_index];
127 }
128}
129
130// Explicit instantiation
#define EXCEPTION(message)
Forward declaration which is going to be used for friendship.
void SetNonConstantConductivities(std::vector< c_vector< double, SPACE_DIM > > *pNonConstantConductivities)
c_matrix< double, SPACE_DIM, SPACE_DIM > & operator[](const unsigned global_index)
void SetConstantConductivities(c_vector< double, 1 > constantConductivities)
void SetFibreOrientationFile(const FileFinder &rFibreOrientationFile)