Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
AbstractMeshWriter.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
4All rights reserved.
5
6University of Oxford means the Chancellor, Masters and Scholars of the
7University of Oxford, having an administrative office at Wellington
8Square, Oxford OX1 2JD, UK.
9
10This file is part of Chaste.
11
12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
16 * Redistributions in binary form must reproduce the above copyright notice,
17 this list of conditions and the following disclaimer in the documentation
18 and/or other materials provided with the distribution.
19 * Neither the name of the University of Oxford nor the names of its
20 contributors may be used to endorse or promote products derived from this
21 software without specific prior written permission.
22
23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
26ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
27LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
28CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
29GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
30HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
31LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
32OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
33
34*/
35
36#include <cassert>
37#include "AbstractMeshWriter.hpp"
38#include "PetscTools.hpp"
39
40template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
42 const std::string& rBaseName,
43 const bool clearOutputDir)
44 : mBaseName(rBaseName),
45 mpMeshReader(nullptr)
46{
47 mpOutputFileHandler = new OutputFileHandler(rDirectory, clearOutputDir);
48}
49
50template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
55
56template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
58{
59 return mpOutputFileHandler->GetOutputDirectoryFullPath();
60}
61
62template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
64{
65 return mNumNodes;
66}
67
68template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
70{
71 return mNumElements;
72}
74template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
76{
77 return mNumBoundaryElements;
78}
79
80template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
82{
83 return mNumCableElements;
84}
86template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
88{
89 assert(mpMeshReader != nullptr);
90 return mpMeshReader->GetNextNode();
91}
92
93template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
96 assert(mpMeshReader != nullptr);
97 return mpMeshReader->GetNextElementData();
98}
99
100template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
102{
103 assert(mpMeshReader != nullptr);
104 return mpMeshReader->GetNextFaceData();
106
107template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
109{
110 assert(mpMeshReader != nullptr);
111 return mpMeshReader->GetNextCableElementData();
112}
113
114template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
116{
117 mpMeshReader = &rMeshReader;
118 mNumNodes = mpMeshReader->GetNumNodes();
119 mNumElements = mpMeshReader->GetNumElements();
120 mNumBoundaryElements = mpMeshReader->GetNumFaces();
121
122 // Only triangles mesh readers know about cable elements
123 mNumCableElements = mpMeshReader->GetNumCableElements();
124
126 {
127 WriteFiles();
128 }
129}
130
131// Explicit instantiation
132template class AbstractMeshWriter<1,1>;
133template class AbstractMeshWriter<1,2>;
134template class AbstractMeshWriter<1,3>;
135template class AbstractMeshWriter<2,2>;
136template class AbstractMeshWriter<2,3>;
137template class AbstractMeshWriter<3,3>;
virtual unsigned GetNumNodes() const =0
std::string GetOutputDirectory()
virtual ElementData GetNextBoundaryElement()
virtual unsigned GetNumNodes()
virtual ElementData GetNextCableElement()
void WriteFilesUsingMeshReader(AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader)
AbstractMeshWriter(const std::string &rDirectory, const std::string &rBaseName, const bool clearOutputDir=true)
OutputFileHandler * mpOutputFileHandler
virtual ElementData GetNextElement()
virtual std::vector< double > GetNextNode()
static bool AmMaster()