AbstractPhaseBasedCellCycleModel.hpp

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*/
 
#ifndef ABSTRACTPHASEBASEDCELLCYCLEMODEL_HPP_
#define ABSTRACTPHASEBASEDCELLCYCLEMODEL_HPP_
 
#include "ChasteSerialization.hpp"
#include "ClassIsAbstract.hpp"
 
#include <boost/serialization/base_object.hpp>
 
#include <vector>
 
#include "AbstractCellCycleModel.hpp"
#include "CellCyclePhases.hpp"
#include "SimulationTime.hpp"
 
 
class AbstractPhaseBasedCellCycleModel : public AbstractCellCycleModel
{
private:
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCellCycleModel>(*this);
        archive & mCurrentCellCyclePhase;
        archive & mG1Duration;
        archive & mMinimumGapDuration;
        archive & mStemCellG1Duration;
        archive & mTransitCellG1Duration;
        archive & mSDuration;
        archive & mG2Duration;
        archive & mMDuration;
    }
 
protected:
 
    CellCyclePhase mCurrentCellCyclePhase;
 
    double mG1Duration;
 
    double mMinimumGapDuration;
 
    double mStemCellG1Duration;
 
    double mTransitCellG1Duration;
 
    double mSDuration;
 
    double mG2Duration;
 
    double mMDuration;
 
    AbstractPhaseBasedCellCycleModel(const AbstractPhaseBasedCellCycleModel& rModel);
 
public:
 
    AbstractPhaseBasedCellCycleModel();
 
    virtual ~AbstractPhaseBasedCellCycleModel();
 
    virtual bool ReadyToDivide();
 
    virtual void ResetForDivision();
 
    virtual void UpdateCellCyclePhase()=0;
 
    CellCyclePhase GetCurrentCellCyclePhase() const;
 
    virtual double GetG1Duration() const;
 
    double GetStemCellG1Duration() const;
 
    double GetTransitCellG1Duration() const;
 
    double GetSG2MDuration() const;
 
    virtual double GetSDuration() const;
 
    virtual double GetG2Duration() const;
 
    virtual double GetMDuration() const;
 
    virtual void SetStemCellG1Duration(double stemCellG1Duration);
 
    virtual void SetTransitCellG1Duration(double transitCellG1Duration);
 
    void SetSDuration(double sDuration);
 
    void SetG2Duration(double g2Duration);
 
    void SetMDuration(double mDuration);
 
    virtual double GetAverageTransitCellCycleTime();
 
    virtual double GetAverageStemCellCycleTime();
 
    double GetMinimumGapDuration() const;
 
    void SetMinimumGapDuration(double minimumGapDuration);
 
    virtual void OutputCellCycleModelParameters(out_stream& rParamsFile)=0;
};
 
CLASS_IS_ABSTRACT(AbstractPhaseBasedCellCycleModel)
 
#endif /*ABSTRACTPHASEBASEDCELLCYCLEMODEL_HPP_*/