BidomainSolver.hpp

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*/
 
 
#ifndef BIDOMAINSOLVER_HPP_
#define BIDOMAINSOLVER_HPP_
 
 
#include "UblasIncludes.hpp"
 
//#include <iostream>
#include <vector>
#include <petscvec.h>
 
#include "AbstractBidomainSolver.hpp"
#include "HeartConfig.hpp"
#include "BidomainAssembler.hpp"
#include "BidomainMassMatrixAssembler.hpp"
#include "BidomainCorrectionTermAssembler.hpp"
#include "BidomainNeumannSurfaceTermAssembler.hpp"
 
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class BidomainSolver : public AbstractBidomainSolver<ELEMENT_DIM,SPACE_DIM>
{
private:
    Mat mMassMatrix;
 
    Vec mVecForConstructingRhs;
 
    BidomainAssembler<ELEMENT_DIM,SPACE_DIM>* mpBidomainAssembler;
 
    BidomainNeumannSurfaceTermAssembler<ELEMENT_DIM,SPACE_DIM>* mpBidomainNeumannSurfaceTermAssembler;
 
    BidomainCorrectionTermAssembler<ELEMENT_DIM,SPACE_DIM>* mpBidomainCorrectionTermAssembler;
 
 
 
 
    void SetupLinearSystem(Vec currentSolution, bool computeMatrix);
 
public:
    BidomainSolver(bool bathSimulation,
                   AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh,
                   BidomainTissue<SPACE_DIM>* pTissue,
                   BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,2>* pBoundaryConditions);
 
    ~BidomainSolver();
 
    void InitialiseForSolve(Vec initialSolution);
};
 
 
#endif /*BIDOMAINSOLVER_HPP_*/