Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
BidomainTissue.hpp
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35
36
37#ifndef BIDOMAINTISSUE_HPP_
38#define BIDOMAINTISSUE_HPP_
39
41#include <boost/serialization/base_object.hpp>
42
43#include <vector>
45
46#include "AbstractCardiacTissue.hpp"
47#include "AbstractConductivityTensors.hpp"
48
56template <unsigned SPACE_DIM>
57class BidomainTissue : public virtual AbstractCardiacTissue<SPACE_DIM>
58{
59private:
60 friend class TestBidomainTissue; // for testing.
61
70 template<class Archive>
71 void serialize(Archive & archive, const unsigned int version)
72 {
73 archive & boost::serialization::base_object<AbstractCardiacTissue<SPACE_DIM> >(*this);
74 // Conductivity tensors are dealt with by HeartConfig, and the caches get regenerated.
75 }
76
79
84
85public:
91 BidomainTissue(AbstractCardiacCellFactory<SPACE_DIM>* pCellFactory, bool exchangeHalos=false);
92
99
104
109 const c_matrix<double, SPACE_DIM, SPACE_DIM>& rGetExtracellularConductivityTensor(unsigned elementIndex);
110};
111
112// Declare identifier for the serializer
115
116namespace boost
117{
118namespace serialization
119{
120
121template<class Archive, unsigned SPACE_DIM>
122inline void save_construct_data(
123 Archive & ar, const BidomainTissue<SPACE_DIM> * t, const unsigned int file_version)
124{
125 const AbstractTetrahedralMesh<SPACE_DIM,SPACE_DIM>* p_mesh = t->pGetMesh();
126 ar & p_mesh;
127
128 // CreateIntracellularConductivityTensor() is called by constructor and uses HeartConfig. So make sure that it is
129 // archived too (needs doing before construction so appears here instead of usual archive location).
131 ar & *p_config;
132 ar & p_config;
133}
134
139template<class Archive, unsigned SPACE_DIM>
140inline void load_construct_data(
141 Archive & ar, BidomainTissue<SPACE_DIM> * t, const unsigned int file_version)
142{
144 ar & p_mesh;
145
146 // CreateIntracellularConductivityTensor() is called by AbstractCardiacTissue constructor and uses HeartConfig.
147 // (as does CreateExtracellularConductivityTensor). So make sure that it is
148 // archived too (needs doing before construction so appears here instead of usual archive location).
150 ar & *p_config;
151 ar & p_config;
152
153 ::new(t)BidomainTissue<SPACE_DIM>(p_mesh);
154}
155}
156} // namespace ...
157
158
159#endif /*BIDOMAINTISSUE_HPP_*/
gcov doesn't like this file...
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
Forward declaration which is going to be used for friendship.
void CreateExtracellularConductivityTensors()
const c_matrix< double, SPACE_DIM, SPACE_DIM > & rGetExtracellularConductivityTensor(unsigned elementIndex)
AbstractConductivityTensors< SPACE_DIM, SPACE_DIM > * mpExtracellularConductivityTensors
friend class boost::serialization::access
void serialize(Archive &archive, const unsigned int version)
static HeartConfig * Instance()