CardiacElectroMechanicsVtkHandler.hpp

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#ifndef CARDIACELECTROMECHANICSVTKHANDLER_HPP_
#define CARDIACELECTROMECHANICSVTKHANDLER_HPP_
 
#include "AbstractCardiacProblem.hpp"
#include "AbstractNonlinearElasticitySolver.hpp"
#include "FineCoarseMeshPair.hpp"
#include "ReplicatableVector.hpp"
#include "ElectroMechanicsProblemDefinition.hpp"
#include "VtkDeformedMeshWriter.hpp"
#include "VoltageInterpolaterOntoMechanicsMesh.hpp"
#include "VtkNonlinearElasticitySolutionWriter.hpp"
 
template<unsigned DIM, unsigned ELEC_PROB_DIM=1>
class CardiacElectroMechanicsVtkHandler
{
  friend class TestCardiacElectroMechanicsVtkHandler; // for testing 
  
  private: 
    AbstractNonlinearElasticitySolver<DIM>& mrMechanicsSolver;
 
    std::vector<double> mInterpolatedVoltagesNodeWise;
    
    std::vector<c_vector<double,DIM> > mDisplacements;
 
    std::vector<c_matrix<double,DIM,DIM> > mStrains;
 
    VtkNonlinearElasticitySolutionWriter<DIM>* mpVtkElastictyWriter;
 
#ifdef CHASTE_VTK // Requires "sudo aptitude install libvtk5-dev" or similar
    VtkDeformedMeshWriter<DIM>* mpVtkWriter;
#endif
 
    VoltageInterpolaterOntoMechanicsMesh<DIM>* mpInterpolater;
 
    QuadraticMesh<DIM>* mpVtkOutputMesh; 
 
  public: 
 
    CardiacElectroMechanicsVtkHandler(AbstractNonlinearElasticitySolver<DIM>& rMechanicsSolver,
                                      QuadraticMesh<DIM>& rQuadMesh,
                                      TetrahedralMesh<DIM,DIM>& rElectricsMesh,
                                      ReplicatableVector& rElectricsInitialCondition,
                                      const std::string& rOutputDir);
     ~CardiacElectroMechanicsVtkHandler();
     
     void WriteSolution(unsigned counter, ReplicatableVector& rElectricsSolution);
};
 
#endif //CARDIACELECTROMECHANICSVTKHANDLER_HPP_