CellCycleModelOdeHandler.hpp

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*/
 
#ifndef CELLCYCLEMODELODEHANDLER_HPP_
#define CELLCYCLEMODELODEHANDLER_HPP_
 
#include <boost/shared_ptr.hpp>
#include <boost/noncopyable.hpp>
 
#include "ChasteSerialization.hpp"
#include "AbstractOdeSystem.hpp"
#include "AbstractCellCycleModelOdeSolver.hpp"
#include "SimulationTime.hpp"
 
class CellCycleModelOdeHandler
{
private:
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & mpOdeSystem;
        archive & mpOdeSolver;
        archive & mLastTime;
        archive & mDt;
        archive & mFinishedRunningOdes;
    }
 
    CellCycleModelOdeHandler& operator=(const AbstractCellCycleModelOdeSolver&);
 
protected:
 
    CellCycleModelOdeHandler(const CellCycleModelOdeHandler& rHandler);
 
    double mDt;
 
    AbstractOdeSystem* mpOdeSystem;
 
    boost::shared_ptr<AbstractCellCycleModelOdeSolver> mpOdeSolver;
 
    double mLastTime;
 
    bool mFinishedRunningOdes;
 
    bool SolveOdeToTime(double currentTime);
 
    virtual void AdjustOdeParameters(double currentTime);
 
public:
 
    CellCycleModelOdeHandler(double lastTime = SimulationTime::Instance()->GetTime(),
                             boost::shared_ptr<AbstractCellCycleModelOdeSolver> pOdeSolver = boost::shared_ptr<AbstractCellCycleModelOdeSolver>());
 
    virtual ~CellCycleModelOdeHandler();
 
    AbstractOdeSystem* GetOdeSystem() const;
 
    void SetOdeSystem(AbstractOdeSystem* pOdeSystem);
 
    const boost::shared_ptr<AbstractCellCycleModelOdeSolver> GetOdeSolver() const;
 
    void SetLastTime(double lastTime);
 
    double GetDt();
 
    void SetDt(double timeStep);
 
    void SetStateVariables(const std::vector<double>& rStateVariables);
 
    std::vector<double> GetProteinConcentrations() const;
 
    void SetProteinConcentrationsForTestsOnly(double lastTime, std::vector<double> proteinConcentrations);
};
 
#endif /*CELLCYCLEMODELODEHANDLER_HPP_*/