DeltaNotchEdgeSrnModel.hpp

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*/
 
#ifndef DELTANOTCHEDGESRNMODEL_HPP_
#define DELTANOTCHEDGESRNMODEL_HPP_
 
#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>
 
#include "DeltaNotchEdgeOdeSystem.hpp"
#include "AbstractOdeSrnModel.hpp"
 
class DeltaNotchEdgeSrnModel : public AbstractOdeSrnModel
{
private:
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractOdeSrnModel>(*this);
    }
 
protected:
 
    DeltaNotchEdgeSrnModel(const DeltaNotchEdgeSrnModel& rModel);
 
public:
 
    DeltaNotchEdgeSrnModel(boost::shared_ptr<AbstractCellCycleModelOdeSolver> pOdeSolver = boost::shared_ptr<AbstractCellCycleModelOdeSolver>());
 
    virtual AbstractSrnModel* CreateSrnModel();
 
    virtual void Initialise();
 
    virtual void InitialiseDaughterCell();
 
    virtual void SimulateToCurrentTime();
 
    void UpdateDeltaNotch();
 
    double GetNotch();
 
    void SetNotch(double value);
 
    double GetDelta();
 
    void SetDelta(double value);
 
    double GetNeighbouringDelta() const;
 
    double GetInteriorDelta() const;
 
    double GetInteriorNotch() const;
 
    virtual void OutputSrnModelParameters(out_stream& rParamsFile);
 
    virtual void AddSrnQuantities(AbstractSrnModel* pOtherSrn,
                                  const double scale = 1.0);
 
    virtual void AddShrunkEdgeSrn(AbstractSrnModel* pShrunkEdgeSrn);
 
    virtual void AddMergedEdgeSrn(AbstractSrnModel* pMergedEdgeSrn);
 
    virtual void SplitEdgeSrn(const double relativePosition);
};
 
typedef boost::shared_ptr<DeltaNotchEdgeSrnModel> DeltaNotchEdgeSrnModelPtr;
 
// Declare identifier for the serializer
#include "SerializationExportWrapper.hpp"
CHASTE_CLASS_EXPORT(DeltaNotchEdgeSrnModel)
#include "CellCycleModelOdeSolverExportWrapper.hpp"
EXPORT_CELL_CYCLE_MODEL_ODE_SOLVER(DeltaNotchEdgeSrnModel)
 
#endif  /* DELTANOTCHEDGESRNMODEL_HPP_ */