AbstractOdeSrnModel.hpp

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*/
 
#ifndef ABSTRACTODESRNMODEL_HPP_
#define ABSTRACTODESRNMODEL_HPP_
 
#include <vector>
#include "ChasteSerialization.hpp"
#include "ClassIsAbstract.hpp"
#include <boost/serialization/base_object.hpp>
#include <boost/serialization/vector.hpp>
#include "AbstractSrnModel.hpp"
#include "CellCycleModelOdeHandler.hpp"
#include "SimulationTime.hpp"
 
class AbstractOdeSrnModel : public AbstractSrnModel, public CellCycleModelOdeHandler
{
private:
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractSrnModel>(*this);
        archive & boost::serialization::base_object<CellCycleModelOdeHandler>(*this);
        archive & mInitialConditions;
        archive & mStateSize;
    }
 
protected:
 
    std::vector<double> mInitialConditions;
 
    unsigned mStateSize;
 
    using AbstractSrnModel::Initialise;
    void Initialise(AbstractOdeSystem* pOdeSystem);
 
    AbstractOdeSrnModel(const AbstractOdeSrnModel& rModel);
 
public:
    AbstractOdeSrnModel(unsigned stateSize,
                        boost::shared_ptr<AbstractCellCycleModelOdeSolver> pOdeSolver = boost::shared_ptr<AbstractCellCycleModelOdeSolver>());
 
    virtual ~AbstractOdeSrnModel();
 
    virtual void SimulateToCurrentTime();
 
    virtual void ResetForDivision();
 
    void SetInitialConditions(std::vector<double> initialConditions);
 
    virtual void OutputSrnModelParameters(out_stream& rParamsFile);
 
    virtual void ScaleSrnVariables(const double theta);
};
 
CLASS_IS_ABSTRACT(AbstractOdeSrnModel)
 
#endif /* ABSTRACTODESRNMODEL_HPP_ */