Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
DifferentialAdhesionPottsUpdateRule.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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34*/
35
36#include "DifferentialAdhesionPottsUpdateRule.hpp"
37
38#include "CellLabel.hpp"
39
40template<unsigned DIM>
43 mLabelledCellLabelledCellAdhesionEnergyParameter(0.1), // Educated guess
44 mLabelledCellCellAdhesionEnergyParameter(0.1), // Educated guess
45 mLabelledCellBoundaryAdhesionEnergyParameter(0.2) // Educated guess
46{
47}
48
49template<unsigned DIM>
53
54template<unsigned DIM>
56{
57 if (pCellA->HasCellProperty<CellLabel>() && pCellB->HasCellProperty<CellLabel>())
58 {
59 return GetLabelledCellLabelledCellAdhesionEnergyParameter();
60 }
61 else if (pCellA->HasCellProperty<CellLabel>() || pCellB->HasCellProperty<CellLabel>())
62 {
63 return GetLabelledCellCellAdhesionEnergyParameter();
64 }
65 else
66 {
67 return this->GetCellCellAdhesionEnergyParameter();
68 }
69}
70
71template<unsigned DIM>
73{
74 if (pCell->HasCellProperty<CellLabel>())
75 {
76 return GetLabelledCellBoundaryAdhesionEnergyParameter();
77 }
78 else
79 {
80 return this->GetCellBoundaryAdhesionEnergyParameter();
81 }
82}
83
84template<unsigned DIM>
86{
87 return mLabelledCellLabelledCellAdhesionEnergyParameter;
88}
89
90template<unsigned DIM>
92{
93 return mLabelledCellCellAdhesionEnergyParameter;
94}
95
96template<unsigned DIM>
98{
99 return mLabelledCellBoundaryAdhesionEnergyParameter;
100}
101
102template<unsigned DIM>
104{
105 mLabelledCellLabelledCellAdhesionEnergyParameter = labelledCellLabelledCellAdhesionEnergyParameter;
106}
107
108template<unsigned DIM>
110{
111 mLabelledCellCellAdhesionEnergyParameter = labelledCellCellAdhesionEnergyParameter;
112}
113
114template<unsigned DIM>
116{
117 mLabelledCellBoundaryAdhesionEnergyParameter = labelledCellBoundaryAdhesionEnergyParameter;
118}
119
120template<unsigned DIM>
122{
123 *rParamsFile << "\t\t\t<LabelledCellLabelledCellAdhesionEnergyParameter>" << mLabelledCellLabelledCellAdhesionEnergyParameter << "</LabelledCellLabelledCellAdhesionEnergyParameter>\n";
124 *rParamsFile << "\t\t\t<LabelledCellCellAdhesionEnergyParameter>" << mLabelledCellCellAdhesionEnergyParameter << "</LabelledCellCellAdhesionEnergyParameter>\n";
125 *rParamsFile << "\t\t\t<LabelledCellBoundaryAdhesionEnergyParameter>" << mLabelledCellBoundaryAdhesionEnergyParameter << "</LabelledCellBoundaryAdhesionEnergyParameter>\n";
126
127 // Call method on direct parent class
129}
130
131// Explicit instantiation
135
136// Serialization for Boost >= 1.36
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
void OutputUpdateRuleParameters(out_stream &rParamsFile)
void SetLabelledCellLabelledCellAdhesionEnergyParameter(double labelledCellLabelledCellAdhesionEnergyParameter)
void SetLabelledCellBoundaryAdhesionEnergyParameter(double labelledCellBoundaryAdhesionEnergyParameter)
void SetLabelledCellCellAdhesionEnergyParameter(double labelledCellCellAdhesionEnergyParameter)
virtual double GetCellCellAdhesionEnergy(CellPtr pCellA, CellPtr pCellB)