Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
ImmersedBoundary2dArrays.cpp
1
2/*
3
4Copyright (c) 2005-2024, University of Oxford.
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25AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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34
35*/
36
37#include "ImmersedBoundary2dArrays.hpp"
38#include <assert.h>
39#include "Exception.hpp"
40
41template<unsigned DIM>
42ImmersedBoundary2dArrays<DIM>::ImmersedBoundary2dArrays(ImmersedBoundaryMesh<DIM,DIM>* pMesh, double dt, double reynoldsNumber, bool activeSources)
43 : mpMesh(pMesh),
44 mActiveSources(activeSources)
45{
46 unsigned num_gridpts_x = mpMesh->GetNumGridPtsX();
47 unsigned num_gridpts_y = mpMesh->GetNumGridPtsY();
48
49 // We require an even number of grid points
50 assert(num_gridpts_y % 2 == 0);
51
52 /*
53 * Resize the grids. All complex grids are half-sized in the y-coordinate due to redundancy inherent in the
54 * fast-Fourier method for solving Navier-Stokes.
55 */
56 unsigned reduced_y = 1 + (num_gridpts_y/2);
57
58 // Resize real arrays to be num X by num Y
59 mForceGrids.resize(extents[2][num_gridpts_x][num_gridpts_y]);
60
61 mRightHandSideGrids.resize(extents[3][num_gridpts_x][num_gridpts_y]);
62
63 // The source gradient grids are only needed when fluid sources are present. Otherwise, we need do nothing
65 {
66 mSourceGradientGrids.resize(extents[2][num_gridpts_x][num_gridpts_y]);
67 }
68
69 // Resize Fourier-domain arrays
70 // There are three such FourierGrid arrays if sources are active
71 mOperator1.resize(extents[num_gridpts_x][reduced_y]);
72 mOperator2.resize(extents[num_gridpts_x][reduced_y]);
73 mFourierGrids.resize(extents[2 + (int)mActiveSources][num_gridpts_x][reduced_y]);
74 mPressureGrid.resize(extents[num_gridpts_x][reduced_y]);
75
76 mSin2x.resize(num_gridpts_x);
77 mSin2y.resize(reduced_y);
78
79 /*
80 * There are several constants used in the Fourier domain as part of the Navier-Stokes solution which are constant
81 * once grid sizes are known. We pre-calculate these to eliminate re-calculation at every time step.
82 */
83 double x_spacing = 1.0 / (double) num_gridpts_x;
84 double y_spacing = 1.0 / (double) num_gridpts_y;
85
86 for (unsigned x = 0; x < num_gridpts_x; x++)
87 {
88 mSin2x[x] = sin(2 * M_PI * (double) x * x_spacing);
89 }
90
91 for (unsigned y = 0; y < reduced_y; y++)
92 {
93 mSin2y[y] = sin(2 * M_PI * (double) y * y_spacing);
94 }
95
96 for (unsigned x = 0; x < num_gridpts_x; x++)
97 {
98 for (unsigned y = 0; y < reduced_y; y++)
99 {
100 mOperator1[x][y] = (mSin2x[x] * mSin2x[x] / (x_spacing * x_spacing)) + (mSin2y[y] * mSin2y[y] / (y_spacing * y_spacing));
101 mOperator1[x][y] *= dt / reynoldsNumber;
102
103 double sin_x = sin(M_PI * (double) x * x_spacing);
104 double sin_y = sin(M_PI * (double) y * y_spacing);
105
106 mOperator2[x][y] = (sin_x * sin_x / (x_spacing * x_spacing)) + (sin_y * sin_y / (y_spacing * y_spacing));
107 mOperator2[x][y] *= 4.0 * dt / reynoldsNumber;
108 mOperator2[x][y] += 1.0;
109 }
110 }
111}
112
113template<unsigned DIM>
117
118template<unsigned DIM>
120{
121 return mForceGrids;
122}
123
124template<unsigned DIM>
126{
127 return mRightHandSideGrids;
128}
129
130template<unsigned DIM>
132{
133 return mSourceGradientGrids;
134}
135
136template<unsigned DIM>
138{
139 return mFourierGrids;
140}
141
142template<unsigned DIM>
144{
145 return mPressureGrid;
146}
147
148template<unsigned DIM>
149const multi_array<double, 2>& ImmersedBoundary2dArrays<DIM>::rGetOperator1() const
150{
151 return mOperator1;
152}
153
154template<unsigned DIM>
155const multi_array<double, 2>& ImmersedBoundary2dArrays<DIM>::rGetOperator2() const
156{
157 return mOperator2;
158}
159
160template<unsigned DIM>
161const std::vector<double>& ImmersedBoundary2dArrays<DIM>::rGetSin2x() const
162{
163 return mSin2x;
164}
165
166template<unsigned DIM>
167const std::vector<double>& ImmersedBoundary2dArrays<DIM>::rGetSin2y() const
168{
169 return mSin2y;
170}
171
172template<unsigned DIM>
177
178template<unsigned DIM>
180{
181 return mActiveSources;
182}
183
184// Explicit instantiation
185template class ImmersedBoundary2dArrays<1>;
186template class ImmersedBoundary2dArrays<2>;
187template class ImmersedBoundary2dArrays<3>;
multi_array< std::complex< double >, 3 > mFourierGrids
multi_array< double, 2 > mOperator2
const std::vector< double > & rGetSin2x() const
multi_array< double, 3 > mRightHandSideGrids
multi_array< std::complex< double >, 2 > & rGetModifiablePressureGrid()
const multi_array< double, 2 > & rGetOperator2() const
multi_array< double, 3 > mForceGrids
multi_array< std::complex< double >, 2 > mPressureGrid
multi_array< std::complex< double >, 3 > & rGetModifiableFourierGrids()
const multi_array< double, 2 > & rGetOperator1() const
ImmersedBoundaryMesh< DIM, DIM > * GetMesh()
multi_array< double, 3 > & rGetModifiableSourceGradientGrids()
multi_array< double, 2 > mOperator1
ImmersedBoundaryMesh< DIM, DIM > * mpMesh
multi_array< double, 3 > mSourceGradientGrids
multi_array< double, 3 > & rGetModifiableRightHandSideGrids()
const std::vector< double > & rGetSin2y() const
multi_array< double, 3 > & rGetModifiableForceGrids()