MonodomainPurkinjeVolumeAssembler.cpp

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*/
 
 
 
#ifndef MONODOMAINPURKINJEVOLUMEASSEMBLER_CPP_
#define MONODOMAINPURKINJEVOLUMEASSEMBLER_CPP_
 
#include "MonodomainPurkinjeVolumeAssembler.hpp"
#include "PdeSimulationTime.hpp"
 
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
c_matrix<double,2*(ELEMENT_DIM+1),2*(ELEMENT_DIM+1)> MonodomainPurkinjeVolumeAssembler<ELEMENT_DIM,SPACE_DIM>::ComputeMatrixTerm(
                c_vector<double, ELEMENT_DIM+1> &rPhi,
                c_matrix<double, SPACE_DIM, ELEMENT_DIM+1> &rGradPhi,
                ChastePoint<SPACE_DIM> &rX,
                c_vector<double,2> &rU,
                c_matrix<double, 2, SPACE_DIM> &rGradU /* not used */,
                Element<ELEMENT_DIM,SPACE_DIM>* pElement)
{
    c_vector<double,1> empty_u; /* should pass in rU(1) here, but it won't be used */
    c_matrix<double,1,SPACE_DIM> empty_grad_u; /* ditto above */
 
    c_matrix<double,ELEMENT_DIM+1,ELEMENT_DIM+1> normal_monodomain_mat
        = mMonodomainAssembler.ComputeMatrixTerm(rPhi,rGradPhi,rX,empty_u,empty_grad_u,pElement);
 
    c_matrix<double,2*(ELEMENT_DIM+1),2*(ELEMENT_DIM+1)> ret
        = zero_matrix<double>(2*(ELEMENT_DIM+1),2*(ELEMENT_DIM+1));
 
    // even rows, even columns
    matrix_slice<c_matrix<double, 2*ELEMENT_DIM+2, 2*ELEMENT_DIM+2> >
    slice00(ret, slice(0, 2, ELEMENT_DIM+1), slice(0, 2, ELEMENT_DIM+1));
    slice00 = normal_monodomain_mat;
 
    return ret;
}
 
 
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
MonodomainPurkinjeVolumeAssembler<ELEMENT_DIM,SPACE_DIM>::MonodomainPurkinjeVolumeAssembler(
                        AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh,
                        MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* pTissue)
    : AbstractCardiacFeVolumeIntegralAssembler<ELEMENT_DIM,SPACE_DIM,2,false,true,CARDIAC>(pMesh,pTissue),
      mMonodomainAssembler(pMesh,pTissue)
{
}
 
 
 
// explicit instantiation
 
template class MonodomainPurkinjeVolumeAssembler<2,2>;
template class MonodomainPurkinjeVolumeAssembler<3,3>;
 
#endif /*MONODOMAINPURKINJEVOLUMEASSEMBLER_CPP_*/