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Commit::30a3e656d4b131f8c595cc6eb2becd297337570f
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RandomCaSwitchingUpdateRule.cpp
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/*
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Copyright (c) 2005-2025, University of Oxford.
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All rights reserved.
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University of Oxford means the Chancellor, Masters and Scholars of the
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University of Oxford, having an administrative office at Wellington
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Square, Oxford OX1 2JD, UK.
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This file is part of Chaste.
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice,
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this list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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* Neither the name of the University of Oxford nor the names of its
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contributors may be used to endorse or promote products derived from this
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software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
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GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
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HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
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OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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*/
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#include "RandomCaSwitchingUpdateRule.hpp"
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template
<
unsigned
DIM>
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RandomCaSwitchingUpdateRule<DIM>::RandomCaSwitchingUpdateRule
()
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:
AbstractCaSwitchingUpdateRule
<DIM>(),
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mSwitchingParameter(0.5)
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{
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}
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RandomCaSwitchingUpdateRule<DIM>::RandomCaSwitchingUpdateRule
() {
…
}
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template
<
unsigned
DIM>
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RandomCaSwitchingUpdateRule<DIM>::~RandomCaSwitchingUpdateRule
()
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{
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}
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RandomCaSwitchingUpdateRule<DIM>::~RandomCaSwitchingUpdateRule
() {
…
}
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template
<
unsigned
DIM>
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double
RandomCaSwitchingUpdateRule<DIM>::EvaluateSwitchingProbability
(
unsigned
currentNodeIndex,
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unsigned
neighbourNodeIndex,
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CaBasedCellPopulation<DIM>
& rCellPopulation,
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double
dt,
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double
deltaX)
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{
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return
mSwitchingParameter*dt;
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}
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double
RandomCaSwitchingUpdateRule<DIM>::EvaluateSwitchingProbability
(
unsigned
currentNodeIndex, {
…
}
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template
<
unsigned
DIM>
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double
RandomCaSwitchingUpdateRule<DIM>::GetSwitchingParameter
()
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{
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return
mSwitchingParameter;
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}
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double
RandomCaSwitchingUpdateRule<DIM>::GetSwitchingParameter
() {
…
}
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template
<
unsigned
DIM>
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void
RandomCaSwitchingUpdateRule<DIM>::SetSwitchingParameter
(
double
switchingParameter)
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{
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mSwitchingParameter = switchingParameter;
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}
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void
RandomCaSwitchingUpdateRule<DIM>::SetSwitchingParameter
(
double
switchingParameter) {
…
}
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template
<
unsigned
DIM>
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void
RandomCaSwitchingUpdateRule<DIM>::OutputUpdateRuleParameters
(out_stream& rParamsFile)
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{
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*rParamsFile <<
"\t\t\t<SwitchingParameter>"
<< mSwitchingParameter <<
"</SwitchingParameter>\n"
;
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// Call method on direct parent class
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AbstractCaSwitchingUpdateRule<DIM>::OutputUpdateRuleParameters
(rParamsFile);
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}
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void
RandomCaSwitchingUpdateRule<DIM>::OutputUpdateRuleParameters
(out_stream& rParamsFile) {
…
}
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// Explicit instantiation
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template
class
RandomCaSwitchingUpdateRule<1u>
;
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template
class
RandomCaSwitchingUpdateRule<2u>
;
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template
class
RandomCaSwitchingUpdateRule<3u>
;
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// Serialization for Boost >= 1.36
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#include "
SerializationExportWrapperForCpp.hpp
"
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EXPORT_TEMPLATE_CLASS_SAME_DIMS
(
RandomCaSwitchingUpdateRule
)
SerializationExportWrapperForCpp.hpp
EXPORT_TEMPLATE_CLASS_SAME_DIMS
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
Definition
SerializationExportWrapper.hpp:352
AbstractCaSwitchingUpdateRule
Definition
AbstractCaSwitchingUpdateRule.hpp:50
AbstractCaSwitchingUpdateRule::OutputUpdateRuleParameters
virtual void OutputUpdateRuleParameters(out_stream &rParamsFile)
Definition
AbstractCaSwitchingUpdateRule.cpp:50
CaBasedCellPopulation
Definition
CaBasedCellPopulation.hpp:65
RandomCaSwitchingUpdateRule
Definition
RandomCaSwitchingUpdateRule.hpp:58
RandomCaSwitchingUpdateRule::OutputUpdateRuleParameters
void OutputUpdateRuleParameters(out_stream &rParamsFile)
Definition
RandomCaSwitchingUpdateRule.cpp:73
RandomCaSwitchingUpdateRule::SetSwitchingParameter
void SetSwitchingParameter(double switchingParameter)
Definition
RandomCaSwitchingUpdateRule.cpp:67
RandomCaSwitchingUpdateRule::RandomCaSwitchingUpdateRule
RandomCaSwitchingUpdateRule()
Definition
RandomCaSwitchingUpdateRule.cpp:39
RandomCaSwitchingUpdateRule::EvaluateSwitchingProbability
double EvaluateSwitchingProbability(unsigned currentNodeIndex, unsigned neighbourNodeIndex, CaBasedCellPopulation< DIM > &rCellPopulation, double dt, double deltaX)
Definition
RandomCaSwitchingUpdateRule.cpp:51
RandomCaSwitchingUpdateRule::~RandomCaSwitchingUpdateRule
~RandomCaSwitchingUpdateRule()
Definition
RandomCaSwitchingUpdateRule.cpp:46
RandomCaSwitchingUpdateRule::GetSwitchingParameter
double GetSwitchingParameter()
Definition
RandomCaSwitchingUpdateRule.cpp:61
cell_based
src
population
update_rules
RandomCaSwitchingUpdateRule.cpp
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