Chaste Commit::1fd4e48e3990e67db148bc1bc4cf6991a0049d0c
SimpleNewtonNonlinearSolver.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
4All rights reserved.
5
6University of Oxford means the Chancellor, Masters and Scholars of the
7University of Oxford, having an administrative office at Wellington
8Square, Oxford OX1 2JD, UK.
9
10This file is part of Chaste.
11
12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
16 * Redistributions in binary form must reproduce the above copyright notice,
17 this list of conditions and the following disclaimer in the documentation
18 and/or other materials provided with the distribution.
19 * Neither the name of the University of Oxford nor the names of its
20 contributors may be used to endorse or promote products derived from this
21 software without specific prior written permission.
22
23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
26ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
27LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
28CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
29GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
30HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
31LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
32OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
33
34*/
35
36#include "SimpleNewtonNonlinearSolver.hpp"
37#include <iostream>
38#include <cassert>
39#include "Exception.hpp"
40
42 : mTolerance(1e-5),
43 mWriteStats(false)
44{
45 mTestDampingValues.push_back(-0.1);
46 mTestDampingValues.push_back(0.05);
47 for (unsigned i=1; i<=12; i++)
48 {
49 double val = double(i)/10;
50 mTestDampingValues.push_back(val);
51 }
52}
53
56
57Vec SimpleNewtonNonlinearSolver::Solve(PetscErrorCode (*pComputeResidual)(SNES,Vec,Vec,void*),
58#if (PETSC_VERSION_MAJOR==3 && PETSC_VERSION_MINOR>=5)
59 PetscErrorCode (*pComputeJacobian)(SNES,Vec,Mat,Mat,void*),
60#else
61 PetscErrorCode (*pComputeJacobian)(SNES,Vec,Mat*,Mat*,MatStructure*,void*),
62#endif
63 Vec initialGuess,
64 unsigned fill,
65 void* pContext)
66{
67 PetscInt size;
68 VecGetSize(initialGuess, &size);
69
70 Vec current_solution;
71 VecDuplicate(initialGuess, &current_solution);
72 VecCopy(initialGuess, current_solution);
73
74 // The "false" says that we are allowed to do new mallocs without PETSc 3.3 causing an error
75 LinearSystem linear_system(current_solution, fill, false);
76
77 (*pComputeResidual)(nullptr, current_solution, linear_system.rGetRhsVector(), pContext);
78
79
80 double residual_norm;
81 VecNorm(linear_system.rGetRhsVector(), NORM_2, &residual_norm);
82 double scaled_residual_norm = residual_norm/size;
83
84 if (mWriteStats)
85 {
86 std::cout << "Newton's method:\n Initial ||residual||/N = " << scaled_residual_norm
87 << "\n Attempting to solve to tolerance " << mTolerance << "..\n";
88 }
89
90 double old_scaled_residual_norm;
91 unsigned counter = 0;
92 while (scaled_residual_norm > mTolerance)
93 {
94 counter++;
95
96 // Store the old norm to check with the new later
97 old_scaled_residual_norm = scaled_residual_norm;
98
99 // Compute Jacobian and solve J dx = f for the (negative) update dx, (J the jacobian, f the residual)
100#if (PETSC_VERSION_MAJOR==3 && PETSC_VERSION_MINOR>=5)
101 (*pComputeJacobian)(nullptr, current_solution, (linear_system.rGetLhsMatrix()), nullptr, pContext);
102#else
103 (*pComputeJacobian)(nullptr, current_solution, &(linear_system.rGetLhsMatrix()), nullptr, nullptr, pContext);
104#endif
105
106 Vec negative_update = linear_system.Solve();
107
108
109 Vec test_vec;
110 VecDuplicate(initialGuess, &test_vec);
111
112 double best_damping_factor = 1.0;
113 double best_scaled_residual = 1e20; // large
114
115 // Loop over all the possible damping value and determine which gives smallest residual
116 for (unsigned i=0; i<mTestDampingValues.size(); i++)
117 {
118 // Note: WAXPY calls VecWAXPY(w,a,x,y) which computes w = ax+y
119 PetscVecTools::WAXPY(test_vec,-mTestDampingValues[i],negative_update,current_solution);
120
121 // Compute new residual
122 linear_system.ZeroLinearSystem();
123 (*pComputeResidual)(nullptr, test_vec, linear_system.rGetRhsVector(), pContext);
124 VecNorm(linear_system.rGetRhsVector(), NORM_2, &residual_norm);
125 scaled_residual_norm = residual_norm/size;
126
127 if (scaled_residual_norm < best_scaled_residual)
128 {
129 best_scaled_residual = scaled_residual_norm;
130 best_damping_factor = mTestDampingValues[i];
131 }
132 }
133 PetscTools::Destroy(test_vec);
134
135 // Check the smallest residual was actually smaller than the previous; if not, quit
136 if (best_scaled_residual > old_scaled_residual_norm)
137 {
138 // Free memory
139 PetscTools::Destroy(current_solution);
140 PetscTools::Destroy(negative_update);
141
142 // Raise error
143 EXCEPTION("Iteration " << counter << ", unable to find damping factor such that residual decreases in update direction");
144 }
145
146 if (mWriteStats)
147 {
148 std::cout << " Best damping factor = " << best_damping_factor << "\n";
149 }
150
151 // Update solution: current_guess = current_solution - best_damping_factor*negative_update
152 PetscVecTools::AddScaledVector(current_solution, negative_update, -best_damping_factor);
153 scaled_residual_norm = best_scaled_residual;
154 PetscTools::Destroy(negative_update);
155
156 // Compute best residual vector again and store in linear_system for next Solve()
157 linear_system.ZeroLinearSystem();
158 (*pComputeResidual)(nullptr, current_solution, linear_system.rGetRhsVector(), pContext);
159
160 if (mWriteStats)
161 {
162 std::cout << " Iteration " << counter << ": ||residual||/N = " << scaled_residual_norm << "\n";
163 }
164 }
165
166 if (mWriteStats)
167 {
168 std::cout << " ..solved!\n\n";
169 }
170
171 return current_solution;
172}
173
175{
176 assert(tolerance > 0);
177 mTolerance = tolerance;
178}
#define EXCEPTION(message)
Vec Solve(Vec lhsGuess=nullptr)
Mat & rGetLhsMatrix()
void ZeroLinearSystem()
Vec & rGetRhsVector()
static void Destroy(Vec &rVec)
static void WAXPY(Vec w, double a, Vec x, Vec y)
static void AddScaledVector(Vec y, Vec x, double scaleFactor)
virtual Vec Solve(PetscErrorCode(*pComputeResidual)(SNES, Vec, Vec, void *), PetscErrorCode(*pComputeJacobian)(SNES, Vec, Mat *, Mat *, MatStructure *, void *), Vec initialGuess, unsigned fill, void *pContext)