Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
VertexMeshWriter.hpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
4All rights reserved.
5
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7University of Oxford, having an administrative office at Wellington
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10This file is part of Chaste.
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12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
16 * Redistributions in binary form must reproduce the above copyright notice,
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19 * Neither the name of the University of Oxford nor the names of its
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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33
34*/
35#ifndef VERTEXMESHWRITER_HPP_
36#define VERTEXMESHWRITER_HPP_
37
38// Forward declaration prevents circular include chain
39template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
40class VertexMesh;
41
42#ifdef CHASTE_VTK
43//Requires "sudo aptitude install libvtk5-dev" or similar
44#define _BACKWARD_BACKWARD_WARNING_H 1 //Cut out the strstream deprecated warning for now (gcc4.3)
45#include <vtkDoubleArray.h>
46#include <vtkCellData.h>
47#include <vtkPointData.h>
48#include <vtkConvexPointSet.h>
49#include <vtkPolygon.h>
50#include <vtkUnstructuredGrid.h>
51#include <vtkUnstructuredGridWriter.h>
52#include <vtkXMLUnstructuredGridWriter.h>
53#include <vtkDataCompressor.h>
54#endif //CHASTE_VTK
55
56#include "VertexMesh.hpp"
57#include "AbstractMeshWriter.hpp"
58#include "NodeMap.hpp"
59
60// Forward declaration prevents circular include chain
61template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
62class VertexMesh;
63
64template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
66
70template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
71class VertexMeshWriter : public AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>
72{
73private:
79
82
87
88#ifdef CHASTE_VTK
89//Requires "sudo aptitude install libvtk5-dev" or similar
91 vtkUnstructuredGrid* mpVtkUnstructedMesh;
92#endif //CHASTE_VTK
93
94public:
95
103 VertexMeshWriter(const std::string& rDirectory,
104 const std::string& rBaseName,
105 const bool clearOutputDir=true);
106
111
113
119
126 void WriteVtkUsingMesh(VertexMesh<ELEMENT_DIM, SPACE_DIM>& rMesh, std::string stamp="");
127
135
142 void AddCellData(std::string dataName, std::vector<double> dataPayload);
143
150 void AddPointData(std::string dataName, std::vector<double> dataPayload);
151
155 std::vector<double> GetNextNode();
156
161
167
172 void WriteFiles();
173};
174
175#endif /*VERTEXMESHWRITER_HPP_*/
vtkUnstructuredGrid * mpVtkUnstructedMesh
ElementData GetNextElement()
std::vector< double > GetNextNode()
void AddPointData(std::string dataName, std::vector< double > dataPayload)
void MakeVtkMesh(VertexMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)
void WriteVtkUsingMesh(VertexMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::string stamp="")
MeshWriterIterators< ELEMENT_DIM, SPACE_DIM > * mpIters
VertexMesh< ELEMENT_DIM, SPACE_DIM > * mpMesh
void AddCellData(std::string dataName, std::vector< double > dataPayload)
VertexElementData GetNextElementWithFaces()
void WriteFilesUsingMesh(VertexMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)