Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
VertexMeshWriter.hpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
4All rights reserved.
5
6University of Oxford means the Chancellor, Masters and Scholars of the
7University of Oxford, having an administrative office at Wellington
8Square, Oxford OX1 2JD, UK.
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10This file is part of Chaste.
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12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
16 * Redistributions in binary form must reproduce the above copyright notice,
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19 * Neither the name of the University of Oxford nor the names of its
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21 software without specific prior written permission.
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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33
34*/
35#ifndef VERTEXMESHWRITER_HPP_
36#define VERTEXMESHWRITER_HPP_
37
38// Forward declaration prevents circular include chain
39template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
40class VertexMesh;
41
42#ifdef CHASTE_VTK
43//Requires "sudo aptitude install libvtk5-dev" or similar
44#define _BACKWARD_BACKWARD_WARNING_H 1 //Cut out the strstream deprecated warning for now (gcc4.3)
45#include <vtkDoubleArray.h>
46#include <vtkCellData.h>
47#include <vtkPointData.h>
48#include <vtkConvexPointSet.h>
49#include <vtkPolygon.h>
50#include <vtkUnstructuredGrid.h>
51#include <vtkUnstructuredGridWriter.h>
52#include <vtkXMLUnstructuredGridWriter.h>
53#include <vtkDataCompressor.h>
54#endif //CHASTE_VTK
55
56#include "VertexMesh.hpp"
57#include "AbstractMeshWriter.hpp"
58#include "NodeMap.hpp"
59
60// Forward declaration prevents circular include chain
61template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
62class VertexMesh;
63
64template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
66
70template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
71class VertexMeshWriter : public AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>
72{
73private:
79
82
87
88#ifdef CHASTE_VTK
89//Requires "sudo aptitude install libvtk5-dev" or similar
91 vtkUnstructuredGrid* mpVtkUnstructedMesh;
92#endif //CHASTE_VTK
93
94public:
95
103 VertexMeshWriter(const std::string& rDirectory,
104 const std::string& rBaseName,
105 const bool clearOutputDir=true);
106
111
113
119
126 void WriteVtkUsingMesh(VertexMesh<ELEMENT_DIM, SPACE_DIM>& rMesh, std::string stamp="");
127
135
142 void AddCellData(std::string dataName, std::vector<double> dataPayload);
143
150 void AddPointData(std::string dataName, std::vector<double> dataPayload);
151
155 std::vector<double> GetNextNode();
156
161
167
172 void WriteFiles();
173};
174
175#endif /*VERTEXMESHWRITER_HPP_*/
vtkUnstructuredGrid * mpVtkUnstructedMesh
ElementData GetNextElement()
std::vector< double > GetNextNode()
void AddPointData(std::string dataName, std::vector< double > dataPayload)
void MakeVtkMesh(VertexMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)
void WriteVtkUsingMesh(VertexMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::string stamp="")
MeshWriterIterators< ELEMENT_DIM, SPACE_DIM > * mpIters
VertexMesh< ELEMENT_DIM, SPACE_DIM > * mpMesh
void AddCellData(std::string dataName, std::vector< double > dataPayload)
VertexElementData GetNextElementWithFaces()
void WriteFilesUsingMesh(VertexMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)