BackwardEulerLuoRudyIModel1991 Class Reference
#include <BackwardEulerLuoRudyIModel1991.hpp>
Public Member Functions | |
| BackwardEulerLuoRudyIModel1991 (AbstractStimulusFunction *pIntracellularStimulus) | |
| BackwardEulerLuoRudyIModel1991 (AbstractIvpOdeSolver *pSolver, AbstractStimulusFunction *pIntracellularStimulus) | |
| ~BackwardEulerLuoRudyIModel1991 () | |
| void | Init () |
| void | ComputeResidual (const double rCurrentGuess[1], double rResidual[1]) |
| void | ComputeJacobian (const double rCurrentGuess[1], double rJacobian[1][1]) |
| double | GetIIonic () |
| void | VerifyStateVariables () |
| double | GetIntracellularCalciumConcentration () |
Protected Member Functions | |
| void | ComputeOneStepExceptVoltage (double tStart) |
| void | UpdateTransmembranePotential (double time) |
Private Attributes | |
| double | fast_sodium_current_E_Na |
Static Private Attributes | |
| static const double | membrane_C = 1.0 |
| static const double | membrane_F = 96484.6 |
| static const double | membrane_R = 8314 |
| static const double | membrane_T = 310.0 |
| static const double | background_current_E_b = -59.87 |
| static const double | background_current_g_b = 0.03921 |
| static const double | fast_sodium_current_g_Na = 23.0 |
| static const double | ionic_concentrations_Ki = 145.0 |
| static const double | ionic_concentrations_Ko = 5.4 |
| static const double | ionic_concentrations_Nai = 18.0 |
| static const double | ionic_concentrations_Nao = 140.0 |
| static const double | plateau_potassium_current_g_Kp = 0.0183 |
| static const double | time_dependent_potassium_current_PR_NaK = 0.01833 |
Detailed Description
This class sets up the Luo-Rudy I 1991 system of equations, and solves them using a decoupled backward Euler approach.Definition at line 40 of file BackwardEulerLuoRudyIModel1991.hpp.
Constructor & Destructor Documentation
| BackwardEulerLuoRudyIModel1991::BackwardEulerLuoRudyIModel1991 | ( | AbstractStimulusFunction * | pIntracellularStimulus | ) |
| BackwardEulerLuoRudyIModel1991::BackwardEulerLuoRudyIModel1991 | ( | AbstractIvpOdeSolver * | pSolver, | |
| AbstractStimulusFunction * | pIntracellularStimulus | |||
| ) |
Constructor with the same signature as the forward cell models
Definition at line 52 of file BackwardEulerLuoRudyIModel1991.cpp.
References Init().
| BackwardEulerLuoRudyIModel1991::~BackwardEulerLuoRudyIModel1991 | ( | void | ) |
Destructor
Definition at line 64 of file BackwardEulerLuoRudyIModel1991.cpp.
Member Function Documentation
| void BackwardEulerLuoRudyIModel1991::Init | ( | ) | [virtual] |
Initialise the cell: set our state variables to the initial conditions, set model parameters to their default values.
Initialise the cell: set our state variables to the initial conditions (done here), set model parameters to their default values (done by subclasses).
Reimplemented from AbstractCardiacCell.
Definition at line 69 of file BackwardEulerLuoRudyIModel1991.cpp.
References fast_sodium_current_E_Na, AbstractCardiacCell::Init(), OdeSystemInformation< ODE_SYSTEM >::Instance(), and AbstractOdeSystem::mpSystemInfo.
Referenced by BackwardEulerLuoRudyIModel1991().
| void BackwardEulerLuoRudyIModel1991::ComputeOneStepExceptVoltage | ( | double | tStart | ) | [protected, virtual] |
Compute the values of all state variables except the voltage for one timestep.
Implements AbstractBackwardEulerCardiacCell< 1 >.
Definition at line 176 of file BackwardEulerLuoRudyIModel1991.cpp.
References CardiacNewtonSolver< SIZE >::Instance(), and CardiacNewtonSolver< SIZE >::Solve().
| void BackwardEulerLuoRudyIModel1991::UpdateTransmembranePotential | ( | double | time | ) | [protected, virtual] |
Perform a forward Euler step to update the transmembrane potential.
Implements AbstractBackwardEulerCardiacCell< 1 >.
Definition at line 124 of file BackwardEulerLuoRudyIModel1991.cpp.
References fast_sodium_current_E_Na, and membrane_C.
| double BackwardEulerLuoRudyIModel1991::GetIIonic | ( | ) | [virtual] |
Compute the ionic current at the current instant in time (i.e. using the current values of the state variables).
Implements AbstractCardiacCell.
Definition at line 336 of file BackwardEulerLuoRudyIModel1991.cpp.
References fast_sodium_current_E_Na.
| void BackwardEulerLuoRudyIModel1991::VerifyStateVariables | ( | ) | [virtual] |
Check that none of the gating variables have gone out of range. Throws an Exception if any have.
Reimplemented from AbstractCardiacCell.
Definition at line 394 of file BackwardEulerLuoRudyIModel1991.cpp.
| double BackwardEulerLuoRudyIModel1991::GetIntracellularCalciumConcentration | ( | ) | [virtual] |
[Ca_i] is needed for mechanics, so we explcitly have a Get method (rather than use a get by name type method, to avoid inefficiency when using different cells types of cells). This method by defaults throws an exception, so should be implemented in the concrete class if IntracellularCalciumConcentration is one of the state variables
Reimplemented from AbstractCardiacCell.
Definition at line 118 of file BackwardEulerLuoRudyIModel1991.cpp.
Member Data Documentation
const double BackwardEulerLuoRudyIModel1991::membrane_C = 1.0 [static, private] |
Constants for the LuoRudyIModel1991OdeSystem model
Definition at line 46 of file BackwardEulerLuoRudyIModel1991.hpp.
Referenced by UpdateTransmembranePotential().
double BackwardEulerLuoRudyIModel1991::fast_sodium_current_E_Na [private] |
another parameter, which is a function of the above
Definition at line 61 of file BackwardEulerLuoRudyIModel1991.hpp.
Referenced by GetIIonic(), Init(), and UpdateTransmembranePotential().
The documentation for this class was generated from the following files:
- /tmp/release_1/heart/src/odes/BackwardEulerLuoRudyIModel1991.hpp
- /tmp/release_1/heart/src/odes/BackwardEulerLuoRudyIModel1991.cpp
