HeartGeometryInformation< SPACE_DIM > Class Template Reference

#include <HeartGeometryInformation.hpp>

Inheritance diagram for HeartGeometryInformation< SPACE_DIM >:

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List of all members.

Public Member Functions

 HeartGeometryInformation (AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > &rMesh, const std::string &rEpiFile, const std::string &rEndoFile, bool indexFromZero)
 HeartGeometryInformation (AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > &rMesh, const std::string &rEpiFile, const std::string &rLVFile, const std::string &rRVFile, bool indexFromZero)
 HeartGeometryInformation (std::string nodeHeterogeneityFileName)
HeartRegionType GetHeartRegion (unsigned nodeIndex) const
std::vector< double > & rGetDistanceMapEpicardium ()
std::vector< double > & rGetDistanceMapEndocardium ()
std::vector< double > & rGetDistanceMapRightVentricle ()
std::vector< double > & rGetDistanceMapLeftVentricle ()
const std::vector< unsigned > & rGetNodesOnEpiSurface ()
const std::vector< unsigned > & rGetNodesOnEndoSurface ()
const std::vector< unsigned > & rGetNodesOnLVSurface ()
const std::vector< unsigned > & rGetNodesOnRVSurface ()
const std::vector
< HeartLayerType > & 		rGetLayerForEachNode ()
double CalculateRelativeWallPosition (unsigned nodeIndex)
void DetermineLayerForEachNode (double epiFraction, double endoFraction)
void WriteLayerForEachNode (std::string outputDir, std::string file)
ChasteCuboid< SPACE_DIM > CalculateBoundingBoxOfEpi ()
ChasteCuboid< SPACE_DIM > CalculateBoundingBoxOfEndo ()
ChasteCuboid< SPACE_DIM > CalculateBoundingBoxOfLV ()
ChasteCuboid< SPACE_DIM > CalculateBoundingBoxOfRV ()

Private Member Functions

void GetNodesAtSurface (const std::string &surfaceFile, std::vector< unsigned > &rSurfaceNodes, bool indexFromZero=true) const
void ProcessLine (const std::string &line, std::set< unsigned > &rSurfaceNodeIndexSet, unsigned offset) const
double GetDistanceToEndo (unsigned nodeIndex)
double GetDistanceToEpi (unsigned nodeIndex)
ChasteCuboid< SPACE_DIM > CalculateBoundingBoxOfSurface (const std::vector< unsigned > &rSurfaceNodes)

Private Attributes

std::vector< unsigned > mEpiSurface
std::vector< unsigned > mEndoSurface
std::vector< unsigned > mLVSurface
std::vector< unsigned > mRVSurface
AbstractTetrahedralMesh
< SPACE_DIM, SPACE_DIM > * 		mpMesh
std::vector< double > mDistMapEpicardium
std::vector< double > mDistMapEndocardium
std::vector< double > mDistMapRightVentricle
std::vector< double > mDistMapLeftVentricle
unsigned mNumberOfSurfacesProvided
std::vector< HeartLayerType > mLayerForEachNode

Static Private Attributes

static const double LEFT_SEPTUM_SIZE = 2.0/3.0
static const double RIGHT_SEPTUM_SIZE = 1.0/3.0

Detailed Description

template<unsigned SPACE_DIM>
class HeartGeometryInformation< SPACE_DIM >

This class provides a method to calculate the relative position of a node with respect to two (or three) given surfaces

Definition at line 53 of file HeartGeometryInformation.hpp.

Constructor & Destructor Documentation

template<unsigned SPACE_DIM>
HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation ( AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > &  rMesh,
const std::string &  rEpiFile,
const std::string &  rEndoFile,
bool  indexFromZero 
) [inline]

Constructor for a two surface mesh

Parameters:
rMesh,: reference to the mesh
rEpiFile,: file of elements on the epicardial surface
rEndoFile,: file of elements on the endocardial surface
indexFromZero true for native triangles files. false for Memfem files which are indexed from 1.

Definition at line 46 of file HeartGeometryInformation.cpp.

References DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >::ComputeDistanceMap(), HeartGeometryInformation< SPACE_DIM >::GetNodesAtSurface(), HeartGeometryInformation< SPACE_DIM >::mDistMapEndocardium, HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium, HeartGeometryInformation< SPACE_DIM >::mEndoSurface, HeartGeometryInformation< SPACE_DIM >::mEpiSurface, HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided, and HeartGeometryInformation< SPACE_DIM >::mpMesh.

template<unsigned SPACE_DIM>
HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation ( AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > &  rMesh,
const std::string &  rEpiFile,
const std::string &  rLVFile,
const std::string &  rRVFile,
bool  indexFromZero 
) [inline]

Constructor for a three surface mesh

Parameters:
rMesh,: reference to the mesh
rEpiFile,: file of elements on the epicardial surface
rRVFile,: file of elements on the endocardial right ventricular surface
rLVFile,: file of elements on the endocardial left ventricular surface
indexFromZero true for native triangles files. false for Memfem files which are indexed from 1.

Definition at line 65 of file HeartGeometryInformation.cpp.

References DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >::ComputeDistanceMap(), HeartGeometryInformation< SPACE_DIM >::GetNodesAtSurface(), HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium, HeartGeometryInformation< SPACE_DIM >::mDistMapLeftVentricle, HeartGeometryInformation< SPACE_DIM >::mDistMapRightVentricle, HeartGeometryInformation< SPACE_DIM >::mEpiSurface, HeartGeometryInformation< SPACE_DIM >::mLVSurface, HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided, HeartGeometryInformation< SPACE_DIM >::mpMesh, and HeartGeometryInformation< SPACE_DIM >::mRVSurface.

template<unsigned SPACE_DIM>
HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation ( std::string  nodeHeterogeneityFileName  )  [inline]

Alternative constructor that takes in the file containing a list of numbers (as many as the number of nodes). Each number specifies the layer for the corresponding node.

This constructor should be called if the heterogeneities have /already/ been computed by an instance of this class and written to file by the WriteLayerForEachNode() method.

Parameters:
nodeHeterogeneityFileName the file name.

Definition at line 90 of file HeartGeometryInformation.cpp.

References EXCEPTION, HeartGeometryInformation< SPACE_DIM >::mLayerForEachNode, and HeartGeometryInformation< SPACE_DIM >::mpMesh.

Member Function Documentation

template<unsigned SPACE_DIM>
void HeartGeometryInformation< SPACE_DIM >::GetNodesAtSurface ( const std::string &  surfaceFile,
std::vector< unsigned > &  rSurfaceNodes,
bool  indexFromZero = true 
) const [inline, private]

Takes in a file of all the surface elements on ONE PARTICULAR surface of the mesh (eg the right ventricular endo-cardial surface) and collects all the nodes on that surface in one vector

Parameters:
surfaceFile The surface file
rSurfaceNodes The returned vector of nodes indices on this surface
indexFromZero true for native triangles files. false for Memfem files which are indexed from 1.

Definition at line 161 of file HeartGeometryInformation.cpp.

References EXCEPTION, HeartGeometryInformation< SPACE_DIM >::mpMesh, HeartGeometryInformation< SPACE_DIM >::ProcessLine(), and AbstractMesh< ELEMENT_DIM, SPACE_DIM >::rGetNodePermutation().

Referenced by HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation().

template<unsigned SPACE_DIM>
void HeartGeometryInformation< SPACE_DIM >::ProcessLine ( const std::string &  line,
std::set< unsigned > &  rSurfaceNodeIndexSet,
unsigned  offset 
) const [inline, private]

Helper function for GetNodesAtSurface

Parameters:
line A line in a surface file
rSurfaceNodeIndexSet The nodes in the element corresponding to this line
offset is the lowest index of a node in the original mesh (0 for native triangles or 1 for MEMFEM)

Definition at line 142 of file HeartGeometryInformation.cpp.

References EXCEPTION.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetNodesAtSurface().

template<unsigned SPACE_DIM>
double HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo ( unsigned  nodeIndex  )  [inline, private]

Helper method to calculate the distance between the node and the Endocardial surface as defined to be the closest surface to the node out of left ventricle and right ventricle.

Parameters:
nodeIndex is the index of the node in the mesh
Returns:
the distance

Definition at line 254 of file HeartGeometryInformation.cpp.

References HeartGeometryInformation< SPACE_DIM >::GetHeartRegion(), HeartRegionCode::LEFT_SEPTUM, HeartRegionCode::LEFT_VENTRICLE_SURFACE, HeartRegionCode::LEFT_VENTRICLE_WALL, HeartGeometryInformation< SPACE_DIM >::mDistMapEndocardium, HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium, HeartGeometryInformation< SPACE_DIM >::mDistMapLeftVentricle, HeartGeometryInformation< SPACE_DIM >::mDistMapRightVentricle, HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided, NEVER_REACHED, HeartRegionCode::RIGHT_SEPTUM, HeartRegionCode::RIGHT_VENTRICLE_SURFACE, HeartRegionCode::RIGHT_VENTRICLE_WALL, and HeartRegionCode::UNKNOWN.

Referenced by HeartGeometryInformation< SPACE_DIM >::CalculateRelativeWallPosition().

template<unsigned SPACE_DIM>
double HeartGeometryInformation< SPACE_DIM >::GetDistanceToEpi ( unsigned  nodeIndex  )  [inline, private]

Helper method to calculate the distance between the node and the Epicardial surface

Parameters:
nodeIndex is the index of the node in the mesh
Returns:
the distance

Definition at line 309 of file HeartGeometryInformation.cpp.

References HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium.

Referenced by HeartGeometryInformation< SPACE_DIM >::CalculateRelativeWallPosition().

template<unsigned SPACE_DIM>
ChasteCuboid< SPACE_DIM > HeartGeometryInformation< SPACE_DIM >::CalculateBoundingBoxOfSurface ( const std::vector< unsigned > &  rSurfaceNodes  )  [inline, private]

Get a bounding box for a group of node indices (such as the epi-surface)

Parameters:
rSurfaceNodes The indices of the nodes which represent this surface

Definition at line 394 of file HeartGeometryInformation.cpp.

References AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetDistributedVectorFactory(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNode(), DistributedVectorFactory::IsGlobalIndexLocal(), and HeartGeometryInformation< SPACE_DIM >::mpMesh.

Referenced by HeartGeometryInformation< ELEMENT_DIM >::CalculateBoundingBoxOfEndo(), HeartGeometryInformation< ELEMENT_DIM >::CalculateBoundingBoxOfEpi(), HeartGeometryInformation< ELEMENT_DIM >::CalculateBoundingBoxOfLV(), and HeartGeometryInformation< ELEMENT_DIM >::CalculateBoundingBoxOfRV().

template<unsigned SPACE_DIM>
HeartRegionType HeartGeometryInformation< SPACE_DIM >::GetHeartRegion ( unsigned  nodeIndex  )  const [inline]

Parameters:
nodeIndex index is the index of the node in the mesh
Returns:
the region type based on the relative distances to epi and endocardial surfaces

Definition at line 221 of file HeartGeometryInformation.cpp.

References HeartRegionCode::LEFT_SEPTUM, HeartGeometryInformation< SPACE_DIM >::LEFT_SEPTUM_SIZE, HeartRegionCode::LEFT_VENTRICLE_WALL, HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium, HeartGeometryInformation< SPACE_DIM >::mDistMapLeftVentricle, HeartGeometryInformation< SPACE_DIM >::mDistMapRightVentricle, HeartRegionCode::RIGHT_SEPTUM, HeartRegionCode::RIGHT_VENTRICLE_WALL, and HeartRegionCode::UNKNOWN.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo().

template<unsigned SPACE_DIM>
std::vector<double>& HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapEpicardium (  )  [inline]

Returns:
the distance map to the epicardium

Definition at line 189 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>
std::vector<double>& HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapEndocardium (  )  [inline]

Returns:
the distance map to the endocardium

Definition at line 198 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>
std::vector<double>& HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapRightVentricle (  )  [inline]

Returns:
the distance map to the right ventricle

Definition at line 208 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>
std::vector<double>& HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapLeftVentricle (  )  [inline]

Returns:
the distance map to the left ventricle

Definition at line 218 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>
const std::vector<unsigned>& HeartGeometryInformation< SPACE_DIM >::rGetNodesOnEpiSurface (  )  [inline]

Get the nodes on the epicardial surface

Definition at line 225 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>
const std::vector<unsigned>& HeartGeometryInformation< SPACE_DIM >::rGetNodesOnEndoSurface (  )  [inline]

Get the nodes on the endocardial surface

Definition at line 232 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>
const std::vector<unsigned>& HeartGeometryInformation< SPACE_DIM >::rGetNodesOnLVSurface (  )  [inline]

Get the nodes on the endocardial left ventricular surface

Definition at line 239 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>
const std::vector<unsigned>& HeartGeometryInformation< SPACE_DIM >::rGetNodesOnRVSurface (  )  [inline]

Get the nodes on the endocardial right ventricular surface

Definition at line 246 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>
const std::vector<HeartLayerType>& HeartGeometryInformation< SPACE_DIM >::rGetLayerForEachNode (  )  [inline]

Get the layer for every node in the mesh.

Definition at line 255 of file HeartGeometryInformation.hpp.

Referenced by HeartConfigRelatedCellFactory< SPACE_DIM >::FillInCellularTransmuralAreas().

template<unsigned SPACE_DIM>
double HeartGeometryInformation< SPACE_DIM >::CalculateRelativeWallPosition ( unsigned  nodeIndex  )  [inline]

Calculates the relative position within the wall thickness (normalised to [0,1])

Parameters:
nodeIndex index is the index of the node in the mesh
Returns:
the relative position

Definition at line 315 of file HeartGeometryInformation.cpp.

References HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), and HeartGeometryInformation< SPACE_DIM >::GetDistanceToEpi().

Referenced by HeartGeometryInformation< SPACE_DIM >::DetermineLayerForEachNode().

template<unsigned SPACE_DIM>
void HeartGeometryInformation< SPACE_DIM >::DetermineLayerForEachNode ( double  epiFraction,
double  endoFraction 
) [inline]

Compute which layer (endocardial, midmyocardial or epicardial) each node is in

Parameters:
epiFraction is the fraction of wall designed to be epicardial layer
endoFraction is the fraction of wall designed to be endocardial layer

Definition at line 330 of file HeartGeometryInformation.cpp.

References HeartGeometryInformation< SPACE_DIM >::CalculateRelativeWallPosition(), EXCEPTION, AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), HeartGeometryInformation< SPACE_DIM >::mLayerForEachNode, and HeartGeometryInformation< SPACE_DIM >::mpMesh.

Referenced by HeartConfigRelatedCellFactory< SPACE_DIM >::FillInCellularTransmuralAreas().

template<unsigned SPACE_DIM>
void HeartGeometryInformation< SPACE_DIM >::WriteLayerForEachNode ( std::string  outputDir,
std::string  file 
) [inline]

Write the layer for each node. DetermineLayerForEachNode() must have been called first.

Parameters:
outputDir Output directory - note not cleaned
file Output file

Definition at line 363 of file HeartGeometryInformation.cpp.

References PetscTools::AmMaster(), PetscTools::Barrier(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), HeartGeometryInformation< SPACE_DIM >::mLayerForEachNode, HeartGeometryInformation< SPACE_DIM >::mpMesh, and OutputFileHandler::OpenOutputFile().

template<unsigned SPACE_DIM>
ChasteCuboid<SPACE_DIM> HeartGeometryInformation< SPACE_DIM >::CalculateBoundingBoxOfEpi (  )  [inline]

Uses CalculateBoundingBoxOfSurface to calculate an axis-aligned bounding box of the nodes in the input epicardial surface

Definition at line 290 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>
ChasteCuboid<SPACE_DIM> HeartGeometryInformation< SPACE_DIM >::CalculateBoundingBoxOfEndo (  )  [inline]

Uses CalculateBoundingBoxOfSurface to calculate an axis-aligned bounding box of the nodes in the input endocardial surface

Definition at line 300 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>
ChasteCuboid<SPACE_DIM> HeartGeometryInformation< SPACE_DIM >::CalculateBoundingBoxOfLV (  )  [inline]

Uses CalculateBoundingBoxOfSurface to calculate an axis-aligned bounding box of the nodes in the input endocardial left ventricular surface

Definition at line 310 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>
ChasteCuboid<SPACE_DIM> HeartGeometryInformation< SPACE_DIM >::CalculateBoundingBoxOfRV (  )  [inline]

Uses CalculateBoundingBoxOfSurface to calculate an axis-aligned bounding box of the nodes in the input endocardial left ventricular surface

Definition at line 320 of file HeartGeometryInformation.hpp.

Member Data Documentation

template<unsigned SPACE_DIM>
const double HeartGeometryInformation< SPACE_DIM >::LEFT_SEPTUM_SIZE = 2.0/3.0 [inline, static, private]

Area of the septum considered to belong to the left septum (relative to 1)

Definition at line 58 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetHeartRegion().

template<unsigned SPACE_DIM>
const double HeartGeometryInformation< SPACE_DIM >::RIGHT_SEPTUM_SIZE = 1.0/3.0 [inline, static, private]

Area of the septum considered to belong to the right septum (relative to 1)

Definition at line 60 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>
std::vector<unsigned> HeartGeometryInformation< SPACE_DIM >::mEpiSurface [private]

The nodes on the epicardial surface

Definition at line 63 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< ELEMENT_DIM >::CalculateBoundingBoxOfEpi(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetNodesOnEpiSurface().

template<unsigned SPACE_DIM>
std::vector<unsigned> HeartGeometryInformation< SPACE_DIM >::mEndoSurface [private]

The nodes on the endocardial surface (only used in the 2 surface case)

Definition at line 66 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< ELEMENT_DIM >::CalculateBoundingBoxOfEndo(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetNodesOnEndoSurface().

template<unsigned SPACE_DIM>
std::vector<unsigned> HeartGeometryInformation< SPACE_DIM >::mLVSurface [private]

The nodes on the endocardial left ventricular surface (only used in the 3 surface case)

Definition at line 69 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< ELEMENT_DIM >::CalculateBoundingBoxOfLV(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetNodesOnLVSurface().

template<unsigned SPACE_DIM>
std::vector<unsigned> HeartGeometryInformation< SPACE_DIM >::mRVSurface [private]

The nodes on the endocardial right ventricular surface (only used in the 3 surface case)

Definition at line 72 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< ELEMENT_DIM >::CalculateBoundingBoxOfRV(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetNodesOnRVSurface().

template<unsigned SPACE_DIM>
AbstractTetrahedralMesh<SPACE_DIM,SPACE_DIM>* HeartGeometryInformation< SPACE_DIM >::mpMesh [private]

The mesh of the problem

Definition at line 111 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::CalculateBoundingBoxOfSurface(), HeartGeometryInformation< SPACE_DIM >::DetermineLayerForEachNode(), HeartGeometryInformation< SPACE_DIM >::GetNodesAtSurface(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< SPACE_DIM >::WriteLayerForEachNode().

template<unsigned SPACE_DIM>
std::vector<double> HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium [private]

Vector to store the distance map to epicardium

Definition at line 114 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), HeartGeometryInformation< SPACE_DIM >::GetDistanceToEpi(), HeartGeometryInformation< SPACE_DIM >::GetHeartRegion(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetDistanceMapEpicardium().

template<unsigned SPACE_DIM>
std::vector<double> HeartGeometryInformation< SPACE_DIM >::mDistMapEndocardium [private]

Vector to store the distance map to endocardium

Definition at line 117 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetDistanceMapEndocardium().

template<unsigned SPACE_DIM>
std::vector<double> HeartGeometryInformation< SPACE_DIM >::mDistMapRightVentricle [private]

Vector to store the distance map to the right ventricle surface

Definition at line 120 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), HeartGeometryInformation< SPACE_DIM >::GetHeartRegion(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetDistanceMapRightVentricle().

template<unsigned SPACE_DIM>
std::vector<double> HeartGeometryInformation< SPACE_DIM >::mDistMapLeftVentricle [private]

Vector to store the distance map to the left ventricle surface

Definition at line 123 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), HeartGeometryInformation< SPACE_DIM >::GetHeartRegion(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< ELEMENT_DIM >::rGetDistanceMapLeftVentricle().

template<unsigned SPACE_DIM>
unsigned HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided [private]

Flag used to tell the methods whether two or three surfaces have been supplied

Definition at line 126 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), HeartGeometryInformation< ELEMENT_DIM >::rGetDistanceMapEndocardium(), HeartGeometryInformation< ELEMENT_DIM >::rGetDistanceMapLeftVentricle(), HeartGeometryInformation< ELEMENT_DIM >::rGetDistanceMapRightVentricle(), HeartGeometryInformation< ELEMENT_DIM >::rGetNodesOnEndoSurface(), HeartGeometryInformation< ELEMENT_DIM >::rGetNodesOnLVSurface(), and HeartGeometryInformation< ELEMENT_DIM >::rGetNodesOnRVSurface().

template<unsigned SPACE_DIM>
std::vector<HeartLayerType> HeartGeometryInformation< SPACE_DIM >::mLayerForEachNode [private]

Vector to store the layer for each node

Definition at line 129 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::DetermineLayerForEachNode(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), HeartGeometryInformation< ELEMENT_DIM >::rGetLayerForEachNode(), and HeartGeometryInformation< SPACE_DIM >::WriteLayerForEachNode().

The documentation for this class was generated from the following files:
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