, including all inherited members.
| AbstractContractionModel() | AbstractContractionModel | [inline] |
| AbstractOdeBasedContractionModel(unsigned numStateVariables) | AbstractOdeBasedContractionModel | [inline] |
| AbstractOdeSystem(unsigned numberOfStateVariables) | AbstractOdeSystem | |
| AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
| boost::serialization::access (defined in AbstractOdeSystem) | AbstractOdeSystem | [friend] |
| CalculateBackwardEulerResidual(double calciumTroponin, double z, double Q, double &residualComponent1, double &residualComponent2) | NhsModelWithBackwardSolver | [private] |
| CalculateCalciumTrop50() | NhsContractionModel | [protected] |
| CalculateCaTropAndZDerivatives(double calciumTroponin, double z, double Q, double &dCaTrop, double &dz) | NhsModelWithBackwardSolver | [private] |
| CalculateRootFunction(double time, const std::vector< double > &rY) | AbstractOdeSystem | [virtual] |
| CalculateStoppingEvent(double time, const std::vector< double > &rY) | AbstractOdeSystem | [virtual] |
| CalculateT0(double z) | NhsContractionModel | [protected] |
| ComputeDerivedQuantities(double time, const std::vector< double > &rState) | AbstractParameterisedSystem< std::vector< double > > | [virtual] |
| ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< std::vector< double > > | |
| DumpState(const std::string &rMessage, std::vector< double > Y=std::vector< double >()) | AbstractOdeSystem | [protected] |
| EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY) | NhsContractionModel | [virtual] |
| GetActiveTension() | NhsContractionModel | [virtual] |
| GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
| GetAnyVariableIndex(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetAnyVariableUnits(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetCalciumTroponinValue() | NhsContractionModel | |
| GetDerivedQuantityIndex(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetDerivedQuantityUnits(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetInitialConditions() const | AbstractOdeSystem | |
| GetNextActiveTension() | NhsModelWithBackwardSolver | [virtual] |
| GetNumberOfDerivedQuantities() const | AbstractParameterisedSystem< std::vector< double > > | |
| GetNumberOfParameters() const | AbstractParameterisedSystem< std::vector< double > > | |
| GetNumberOfStateVariables() const | AbstractParameterisedSystem< std::vector< double > > | |
| GetParameter(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetParameterIndex(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetParameterUnits(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariable(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariableIndex(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariableUnits(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetSystemInformation() const | AbstractParameterisedSystem< std::vector< double > > | |
| GetSystemName() const | AbstractParameterisedSystem< std::vector< double > > | |
| GetUseAnalyticJacobian() | AbstractOdeSystem | |
| ImplicitSolveForQ() | NhsModelWithBackwardSolver | [private] |
| IsStretchDependent() | NhsContractionModel | [inline, virtual] |
| IsStretchRateDependent() | NhsContractionModel | [inline, virtual] |
| mA | NhsContractionModel | [protected, static] |
| mA1 | NhsContractionModel | [protected, static] |
| mA2 | NhsContractionModel | [protected, static] |
| mA3 | NhsContractionModel | [protected, static] |
| mAlpha0 | NhsContractionModel | [protected, static] |
| mAlpha1 | NhsContractionModel | [protected, static] |
| mAlpha2 | NhsContractionModel | [protected, static] |
| mAlpha3 | NhsContractionModel | [protected, static] |
| mAlphaR1 | NhsContractionModel | [protected, static] |
| mAlphaR2 | NhsContractionModel | [protected, static] |
| mBeta0 | NhsContractionModel | [protected, static] |
| mBeta1 | NhsContractionModel | [protected, static] |
| mCalcium50ref | NhsContractionModel | [protected, static] |
| mCalciumI | NhsContractionModel | [protected] |
| mCalciumTrop50 | NhsContractionModel | [protected] |
| mCalciumTroponinMax | NhsContractionModel | [protected, static] |
| mDLambdaDt | NhsContractionModel | [protected] |
| mDt | NhsModelWithBackwardSolver | [private] |
| mGamma | NhsContractionModel | [protected, static] |
| mK1 | NhsContractionModel | [protected] |
| mK2 | NhsContractionModel | [protected] |
| mKon | NhsContractionModel | [protected, static] |
| mKrefoff | NhsContractionModel | [protected, static] |
| mKZ | NhsContractionModel | [protected, static] |
| mLambda | NhsContractionModel | [protected] |
| mN | NhsContractionModel | [protected, static] |
| mNr | NhsContractionModel | [protected, static] |
| mNumberOfStateVariables | AbstractParameterisedSystem< std::vector< double > > | [protected] |
| mParameters | AbstractParameterisedSystem< std::vector< double > > | [protected] |
| mpSystemInfo | AbstractParameterisedSystem< std::vector< double > > | [protected] |
| mStateVariables | AbstractParameterisedSystem< std::vector< double > > | [protected] |
| mTemporaryStateVariables | AbstractOdeBasedContractionModel | [protected] |
| mTime | AbstractOdeBasedContractionModel | [protected] |
| mTolerance | NhsModelWithBackwardSolver | [private, static] |
| mTref | NhsContractionModel | [protected, static] |
| mUseAnalyticJacobian | AbstractOdeSystem | [protected] |
| mZp | NhsContractionModel | [protected, static] |
| NhsContractionModel() | NhsContractionModel | |
| NhsModelWithBackwardSolver() | NhsModelWithBackwardSolver | |
| rGetConstStateVariables() const | AbstractOdeSystem | |
| rGetDerivedQuantityNames() const | AbstractParameterisedSystem< std::vector< double > > | |
| rGetDerivedQuantityUnits() const | AbstractParameterisedSystem< std::vector< double > > | |
| rGetParameterNames() const | AbstractParameterisedSystem< std::vector< double > > | |
| rGetParameterUnits() const | AbstractParameterisedSystem< std::vector< double > > | |
| rGetStateVariableNames() const | AbstractParameterisedSystem< std::vector< double > > | |
| rGetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
| rGetStateVariableUnits() const | AbstractParameterisedSystem< std::vector< double > > | |
| RunAndUpdate(double startTime, double endTime, double timestep) | NhsModelWithBackwardSolver | [virtual] |
| RunDoNotUpdate(double startTime, double endTime, double timestep) | NhsModelWithBackwardSolver | [virtual] |
| SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractOdeSystem | |
| SetDefaultInitialConditions(const std::vector< double > &rInitialConditions) | AbstractOdeSystem | |
| SetInputParameters(ContractionModelInputParameters &rInputParameters) | NhsContractionModel | [virtual] |
| SetIntracellularCalciumConcentration(double calciumConcentration) | NhsContractionModel | |
| SetParameter(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetParameter(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariable(unsigned index, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariables(const std::vector< double > &rStateVariables) | AbstractOdeSystem | |
| SetStretch(double stretch) | AbstractContractionModel | [inline] |
| SetStretchAndStretchRate(double lambda, double dlambdaDt) | NhsContractionModel | [virtual] |
| UpdateStateVariables() | AbstractOdeBasedContractionModel | [inline, virtual] |
| ~AbstractContractionModel() (defined in AbstractContractionModel) | AbstractContractionModel | [inline, virtual] |
| ~AbstractOdeSystem() | AbstractOdeSystem | [virtual] |
| ~AbstractParameterisedSystem() | AbstractParameterisedSystem< std::vector< double > > | [virtual] |
