OxygenBasedCellKiller< SPACE_DIM > Class Template Reference
#include <OxygenBasedCellKiller.hpp>
Public Member Functions | |
| OxygenBasedCellKiller (AbstractCellPopulation< SPACE_DIM > *pCellPopulation) | |
| void | TestAndLabelSingleCellForApoptosis (CellPtr pCell) |
| virtual void | TestAndLabelCellsForApoptosisOrDeath () |
| void | OutputCellKillerParameters (out_stream &rParamsFile) |
Private Member Functions | |
| template<class Archive> | |
| void | serialize (Archive &archive, const unsigned int version) |
Friends | |
| class | boost::serialization::access |
Detailed Description
template<unsigned SPACE_DIM>
class OxygenBasedCellKiller< SPACE_DIM >
Kills cells that have experienced a prolonged continuous period of hypoxia.The non-dimensionalised oxygen concentration at which cells become hypoxic is optionally passed into the constructor.
Definition at line 44 of file OxygenBasedCellKiller.hpp.
Constructor & Destructor Documentation
| OxygenBasedCellKiller< SPACE_DIM >::OxygenBasedCellKiller | ( | AbstractCellPopulation< SPACE_DIM > * | pCellPopulation | ) | [inline] |
Constructor.
- Parameters:
-
pCellPopulation pointer to the cell population.
Definition at line 32 of file OxygenBasedCellKiller.cpp.
Member Function Documentation
| void OxygenBasedCellKiller< SPACE_DIM >::serialize | ( | Archive & | archive, | |
| const unsigned int | version | |||
| ) | [inline, private] |
Serialize the object and its member variables.
- Parameters:
-
archive the archive version the current version of this class
Reimplemented from AbstractCellKiller< SPACE_DIM >.
Definition at line 50 of file OxygenBasedCellKiller.hpp.
| void OxygenBasedCellKiller< SPACE_DIM >::TestAndLabelSingleCellForApoptosis | ( | CellPtr | pCell | ) | [inline] |
Starts apoptosis if the cell has has been hypoxic for longer than some critical period, and it is currently hypoxic, and a random number is less than some probability of death (which scales linearly with the local oxygen concentration).
- Parameters:
-
pCell the cell to test for apoptosis.
Definition at line 38 of file OxygenBasedCellKiller.cpp.
Referenced by OxygenBasedCellKiller< SPACE_DIM >::TestAndLabelCellsForApoptosisOrDeath().
| void OxygenBasedCellKiller< SPACE_DIM >::TestAndLabelCellsForApoptosisOrDeath | ( | ) | [inline, virtual] |
Loop over cells and start apoptosis if the cell has been undergone a prolonged period of hypoxia.
Implements AbstractCellKiller< SPACE_DIM >.
Definition at line 47 of file OxygenBasedCellKiller.cpp.
References AbstractCellPopulation< DIM >::Begin(), AbstractCellPopulation< DIM >::End(), AbstractCellKiller< SPACE_DIM >::mpCellPopulation, and OxygenBasedCellKiller< SPACE_DIM >::TestAndLabelSingleCellForApoptosis().
| void OxygenBasedCellKiller< DIM >::OutputCellKillerParameters | ( | out_stream & | rParamsFile | ) | [inline, virtual] |
Outputs cell killer parameters to file
As this method is pure virtual, it must be overridden in subclasses.
- Parameters:
-
rParamsFile the file stream to which the parameters are output
Implements AbstractCellKiller< SPACE_DIM >.
Definition at line 58 of file OxygenBasedCellKiller.cpp.
References AbstractCellKiller< SPACE_DIM >::OutputCellKillerParameters().
Friends And Related Function Documentation
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from AbstractCellKiller< SPACE_DIM >.
Definition at line 48 of file OxygenBasedCellKiller.hpp.
The documentation for this class was generated from the following files:
- cell_based/src/population/killers/OxygenBasedCellKiller.hpp
- cell_based/src/population/killers/OxygenBasedCellKiller.cpp
