StochasticDurationGenerationBasedCellCycleModel Class Reference

#include <StochasticDurationGenerationBasedCellCycleModel.hpp>

Inheritance diagram for StochasticDurationGenerationBasedCellCycleModel:

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Collaboration diagram for StochasticDurationGenerationBasedCellCycleModel:

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List of all members.

Public Member Functions
	StochasticDurationGenerationBasedCellCycleModel ()
AbstractCellCycleModel *	CreateCellCycleModel ()
Private Member Functions
template<class Archive>
void	serialize (Archive &archive, const unsigned int version)
void	SetG1Duration ()
Friends
class	boost::serialization::access

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Detailed Description

A stochastic cell cycle model employed by Meineke et al (2001) in their off-lattice model of the intestinal crypt (doi:10.1046/j.0960-7722.2001.00216.x).

Definition at line 42 of file StochasticDurationGenerationBasedCellCycleModel.hpp.

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Constructor & Destructor Documentation

StochasticDurationGenerationBasedCellCycleModel::StochasticDurationGenerationBasedCellCycleModel

(

)

Constructor - just a default, mBirthTime is now set in the AbstractCellCycleModel class. mG1Duration is set very high, it is set for the individual cells when InitialiseDaughterCell is called

Definition at line 31 of file StochasticDurationGenerationBasedCellCycleModel.cpp.

Referenced by CreateCellCycleModel().

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Member Function Documentation

template<class Archive>

void StochasticDurationGenerationBasedCellCycleModel::serialize	(	Archive &	archive,
		const unsigned int	version
	)			[inline, private]

Archive the cell cycle model and random number generator, never used directly - boost uses this.

Parameters:

	archive	the archive
	version	the current version of this class

Reimplemented from AbstractSimpleGenerationBasedCellCycleModel.

Definition at line 55 of file StochasticDurationGenerationBasedCellCycleModel.hpp.

References RandomNumberGenerator::Instance().

void StochasticDurationGenerationBasedCellCycleModel::SetG1Duration

(

)

[private, virtual]

Stochastically set the G1 duration. Called on cell creation at the start of a simulation, and for both parent and daughter cells at cell division.

Reimplemented from AbstractSimpleCellCycleModel.

Definition at line 48 of file StochasticDurationGenerationBasedCellCycleModel.cpp.

References RandomNumberGenerator::Instance(), AbstractCellCycleModel::mCellProliferativeType, AbstractCellCycleModel::mG1Duration, AbstractCellCycleModel::mpCell, NEVER_REACHED, and RandomNumberGenerator::ranf().

AbstractCellCycleModel * StochasticDurationGenerationBasedCellCycleModel::CreateCellCycleModel

(

)

[virtual]

Overridden builder method to create new copies of this cell cycle model.

Implements AbstractCellCycleModel.

Definition at line 35 of file StochasticDurationGenerationBasedCellCycleModel.cpp.

References AbstractCellCycleModel::mCellProliferativeType, AbstractSimpleGenerationBasedCellCycleModel::mGeneration, AbstractSimpleGenerationBasedCellCycleModel::mMaxTransitGenerations, AbstractCellCycleModel::SetCellProliferativeType(), AbstractSimpleGenerationBasedCellCycleModel::SetGeneration(), AbstractSimpleGenerationBasedCellCycleModel::SetMaxTransitGenerations(), and StochasticDurationGenerationBasedCellCycleModel().

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Friends And Related Function Documentation

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractSimpleGenerationBasedCellCycleModel.

Definition at line 47 of file StochasticDurationGenerationBasedCellCycleModel.hpp.

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The documentation for this class was generated from the following files:

• cell_based/src/population/cell/cycle/StochasticDurationGenerationBasedCellCycleModel.hpp
• cell_based/src/population/cell/cycle/StochasticDurationGenerationBasedCellCycleModel.cpp