VanLeeuwen2009WntSwatCellCycleModelHypothesisOne Class Reference
#include <VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.hpp>
Public Member Functions | |
| VanLeeuwen2009WntSwatCellCycleModelHypothesisOne (boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | |
| void | InitialiseOdeSystem (double wntConcentration, boost::shared_ptr< AbstractCellMutationState > pMutationState) |
| AbstractCellCycleModel * | CreateCellCycleModel () |
Private Member Functions | |
| template<class Archive> | |
| void | serialize (Archive &archive, const unsigned int version) |
Friends | |
| class | boost::serialization::access |
Detailed Description
Concrete Van Leeuwen 2009 cell cycle model, using hypothesis one (see paper).Definition at line 37 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.hpp.
Constructor & Destructor Documentation
| VanLeeuwen2009WntSwatCellCycleModelHypothesisOne::VanLeeuwen2009WntSwatCellCycleModelHypothesisOne | ( | boost::shared_ptr< AbstractCellCycleModelOdeSolver > | pOdeSolver = boost::shared_ptr<AbstractCellCycleModelOdeSolver>() |
) |
Default constructor calls base class.
- Parameters:
-
pOdeSolver An optional pointer to a cell cycle model ODE solver object (allows the use of different ODE solvers)
Definition at line 31 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.cpp.
References CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::Instance(), CellCycleModelOdeHandler::mpOdeSolver, and CellCycleModelOdeHandler::SetDt().
Referenced by CreateCellCycleModel().
Member Function Documentation
| void VanLeeuwen2009WntSwatCellCycleModelHypothesisOne::serialize | ( | Archive & | archive, | |
| const unsigned int | version | |||
| ) | [inline, private] |
Archive the cell cycle model, never used directly - boost uses this.
- Parameters:
-
archive the archive version the current version of this class
Reimplemented from AbstractVanLeeuwen2009WntSwatCellCycleModel.
Definition at line 43 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.hpp.
| void VanLeeuwen2009WntSwatCellCycleModelHypothesisOne::InitialiseOdeSystem | ( | double | wntConcentration, | |
| boost::shared_ptr< AbstractCellMutationState > | pMutationState | |||
| ) | [virtual] |
Overloaded method which allocates the ODE system using HYPOTHESIS ONE.
- Parameters:
-
wntConcentration Wnt concentration pMutationState Mutation state
Implements AbstractVanLeeuwen2009WntSwatCellCycleModel.
Definition at line 50 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.cpp.
References CellCycleModelOdeHandler::mpOdeSystem.
Referenced by CreateCellCycleModel().
| AbstractCellCycleModel * VanLeeuwen2009WntSwatCellCycleModelHypothesisOne::CreateCellCycleModel | ( | ) | [virtual] |
Overridden builder method to create new copies of this cell cycle model.
Implements AbstractCellCycleModel.
Definition at line 55 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.cpp.
References AbstractWntOdeBasedCellCycleModel::GetWntLevel(), InitialiseOdeSystem(), AbstractCellCycleModel::mBirthTime, AbstractCellCycleModel::mCellProliferativeType, AbstractCellCycleModel::mDimension, AbstractOdeBasedCellCycleModel::mDivideTime, AbstractOdeBasedCellCycleModel::mFinishedRunningOdes, AbstractOdeBasedCellCycleModel::mG2PhaseStartTime, CellCycleModelOdeHandler::mLastTime, AbstractCellCycleModel::mpCell, CellCycleModelOdeHandler::mpOdeSolver, CellCycleModelOdeHandler::mpOdeSystem, AbstractParameterisedSystem< VECTOR >::rGetStateVariables(), AbstractOdeBasedCellCycleModel::SetBirthTime(), AbstractCellCycleModel::SetCellProliferativeType(), AbstractCellCycleModel::SetDimension(), AbstractOdeBasedCellCycleModel::SetDivideTime(), AbstractOdeBasedCellCycleModel::SetFinishedRunningOdes(), AbstractOdeBasedCellCycleModel::SetG2PhaseStartTime(), CellCycleModelOdeHandler::SetLastTime(), CellCycleModelOdeHandler::SetStateVariables(), and VanLeeuwen2009WntSwatCellCycleModelHypothesisOne().
Friends And Related Function Documentation
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from AbstractVanLeeuwen2009WntSwatCellCycleModel.
Definition at line 41 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.hpp.
The documentation for this class was generated from the following files:
- crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.hpp
- crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.cpp
