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• Abscissa() : AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM > , OdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM > , PdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM > , SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM > , OdePdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
• AbstractAlgebraicContractionModel() : AbstractAlgebraicContractionModel
• AbstractAssemblerSolverHybrid() : AbstractAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, INTERPOLATION_LEVEL >
• AbstractBackwardEulerCardiacCell() : AbstractBackwardEulerCardiacCell< SIZE >
• AbstractBidomainSolver() : AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
• AbstractBoundaryCondition() : AbstractBoundaryCondition< SPACE_DIM >
• AbstractBoundaryConditionsContainer() : AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractCachedMeshReader() : AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
• AbstractCardiacCell() : AbstractCardiacCell
• AbstractCardiacCellFactory() : AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
• AbstractCardiacCellInterface() : AbstractCardiacCellInterface
• AbstractCardiacCellWithModifiers() : AbstractCardiacCellWithModifiers< CARDIAC_CELL >
• AbstractCardiacMechanicsSolver() : AbstractCardiacMechanicsSolver< DIM >
• AbstractCardiacProblem() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractCardiacTissue() : AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
• AbstractCellCycleModel() : AbstractCellCycleModel
• AbstractCellCycleModelOdeSolver() : AbstractCellCycleModelOdeSolver
• AbstractCellKiller() : AbstractCellKiller< SPACE_DIM >
• AbstractCellMutationState() : AbstractCellMutationState
• AbstractCellPopulation() : AbstractCellPopulation< DIM >
• AbstractCellProperty() : AbstractCellProperty
• AbstractCentreBasedCellPopulation() : AbstractCentreBasedCellPopulation< DIM >
• AbstractChasteRegion() : AbstractChasteRegion< SPACE_DIM >
• AbstractContractionModel() : AbstractContractionModel
• AbstractCryptStatistics() : AbstractCryptStatistics
• AbstractCvodeCell() : AbstractCvodeCell
• AbstractDynamicLinearPdeSolver() : AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractElement() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
• AbstractFeObjectAssembler() : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• AbstractForce() : AbstractForce< DIM >
• AbstractHdf5Converter() : AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
• AbstractIvpOdeSolver() : AbstractIvpOdeSolver
• AbstractLinearPdeSolver() : AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractMesh() : AbstractMesh< ELEMENT_DIM, SPACE_DIM >
• AbstractMeshWriter() : AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AbstractModifier() : AbstractModifier
• AbstractMonodomainSolver() : AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >
• AbstractNonlinearAssemblerSolverHybrid() : AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractNonlinearElasticitySolver() : AbstractNonlinearElasticitySolver< DIM >
• AbstractOdeBasedCellCycleModel() : AbstractOdeBasedCellCycleModel
• AbstractOdeBasedContractionModel() : AbstractOdeBasedContractionModel
• AbstractOdeSystem() : AbstractOdeSystem
• AbstractOdeSystemInformation() : AbstractOdeSystemInformation
• AbstractOdeSystemWithAnalyticJacobian() : AbstractOdeSystemWithAnalyticJacobian
• AbstractParameterisedSystem() : AbstractParameterisedSystem< VECTOR >
• AbstractSimpleCellCycleModel() : AbstractSimpleCellCycleModel
• AbstractSimpleGenerationBasedCellCycleModel() : AbstractSimpleGenerationBasedCellCycleModel
• AbstractStaticLinearPdeSolver() : AbstractStaticLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractTetrahedralElement() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralElement< 0, SPACE_DIM >
• AbstractTetrahedralMesh() : AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• AbstractTetrahedralMeshWriter() : AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AbstractTwoBodyInteractionForce() : AbstractTwoBodyInteractionForce< DIM >
• AbstractVanLeeuwen2009WntSwatCellCycleModel() : AbstractVanLeeuwen2009WntSwatCellCycleModel
• AbstractWntOdeBasedCellCycleModel() : AbstractWntOdeBasedCellCycleModel
• AddBoundaryElement() : Node< SPACE_DIM >
• AddCell() : AbstractCellPopulation< DIM > , AbstractCentreBasedCellPopulation< DIM > , MeshBasedCellPopulation< DIM > , MeshBasedCellPopulationWithGhostNodes< DIM > , VertexBasedCellPopulation< DIM >
• AddCellData() : VertexMeshWriter< ELEMENT_DIM, SPACE_DIM > , VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AddCellKiller() : CellBasedSimulation< DIM >
• AddCellProperty() : Cell
• AddDirichletBoundaryCondition() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AddElement() : Node< SPACE_DIM > , Box< DIM > , MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
• AddExtraBoundaryNodes() : QuadraticMesh< DIM >
• AddFace() : VertexElement< ELEMENT_DIM, SPACE_DIM >
• AddForce() : CellBasedSimulation< DIM >
• AddForceContribution() : AbstractForce< DIM > , AbstractTwoBodyInteractionForce< DIM > , ChemotacticForce< DIM > , NagaiHondaForce< DIM > , WelikyOsterForce< DIM > , CryptProjectionForce , LinearSpringWithVariableSpringConstantsForce< DIM > , VertexCryptBoundaryForce< DIM >
• AddLhsMultipleValues() : LinearSystem
• AddModifier() : AbstractCardiacCellWithModifiers< CARDIAC_CELL >
• AddMultipleValuesToMatrix() : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• AddMultipleValuesToVector() : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• AddNeumannBoundaryCondition() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AddNode() : VertexElement< ELEMENT_DIM, SPACE_DIM > , AbstractCellPopulation< DIM > , AbstractElement< ELEMENT_DIM, SPACE_DIM > , MutableMesh< ELEMENT_DIM, SPACE_DIM > , Box< DIM > , MutableVertexMesh< ELEMENT_DIM, SPACE_DIM > , VertexElement< 1, SPACE_DIM > , Cylindrical2dMesh , Cylindrical2dVertexMesh , MeshBasedCellPopulation< DIM > , NodeBasedCellPopulation< DIM > , VertexBasedCellPopulation< DIM >
• AddNodesToBoundaryElements() : QuadraticMesh< DIM >
• AddNodeToBoundaryElement() : QuadraticMesh< DIM >
• AddPointData() : VertexMeshWriter< ELEMENT_DIM, SPACE_DIM > , VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AddProperty() : CellPropertyCollection
• AddRhsMultipleValues() : LinearSystem
• AddStimulus() : MultiStimulus
• AddToMatrixElement() : LinearSystem
• AddToRhsVectorElement() : LinearSystem
• AddTrailingSlash() : OutputFileHandler
• AddWarning() : Warnings
• AdjustOdeParameters() : CellCycleModelOdeHandler , Alarcon2004OxygenBasedCellCycleModel , AbstractVanLeeuwen2009WntSwatCellCycleModel , SingleOdeWntCellCycleModel , WntCellCycleModel
• AdjustOutOfRangeSlowValues() : AbstractCardiacCell
• AdjustStepSize() : RungeKuttaFehlbergIvpOdeSolver
• AdvanceAlongUnlimitedDimension() : AbstractDataWriter , ColumnDataWriter , ParallelColumnDataWriter , Hdf5DataWriter
• AdvanceOneTimeStep() : TimeStepper
• AfterSolve() : CryptSimulation2d , VertexCryptSimulation2d , CellBasedSimulationWithPdes< DIM > , CellBasedSimulation< DIM >
• Alarcon2004OxygenBasedCellCycleModel() : Alarcon2004OxygenBasedCellCycleModel
• Alarcon2004OxygenBasedCellCycleOdeSystem() : Alarcon2004OxygenBasedCellCycleOdeSystem
• AllocateMatrixMemory() : NonlinearElasticitySolver< DIM >
• AmMaster() : PetscTools
• AmTopMost() : PetscTools
• AnalyseMeshForBath() : BidomainProblem< DIM >
• AnalyticJacobian() : AbstractOdeSystemWithAnalyticJacobian , TysonNovak2001OdeSystem
• AnyNonZeroNeumannConditions() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ApcOneHitCellMutationState() : ApcOneHitCellMutationState
• ApcTwoHitCellMutationState() : ApcTwoHitCellMutationState
• ApoptoticCellProperty() : ApoptoticCellProperty
• AppendLocalDataToFiles() : MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM > , AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
• ApplyBoundaryConditions() : AbstractNonlinearElasticitySolver< DIM >
• ApplyCellPopulationBoundaryConditions() : CryptSimulation2d , CellBasedSimulation< DIM > , VertexCryptSimulation2d , CryptSimulation1d
• ApplyDirichletConditions() : AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ApplyDirichletToLinearProblem() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ApplyDirichletToNonlinearJacobian() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ApplyDirichletToNonlinearResidual() : BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ApplyNeummanBoundaryConditionsToVector() : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• ApplyPermutation() : Hdf5DataWriter
• ArchiveOpener() : ArchiveOpener< Archive, Stream >
• AreCellularHeterogeneitiesSpecifiedByCuboids() : HeartConfig
• AreCellularTransmuralHeterogeneitiesRequested() : HeartConfig
• AreCryptSectionCellsLabelled() : AbstractCryptStatistics
• Assemble() : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• AssembleFinalLhsMatrix() : LinearSystem
• AssembleFinalLinearSystem() : LinearSystem
• AssembleIntermediateLhsMatrix() : LinearSystem
• AssembleIntermediateLinearSystem() : LinearSystem
• AssembleMatrix() : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• AssembleOnBoundaryElement() : NonlinearElasticitySolver< DIM >
• AssembleOnElement() : NonlinearElasticitySolver< DIM > , AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• AssembleOnSurfaceElement() : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• AssembleRhsVector() : LinearSystem
• AssembleSystem() : AbstractNonlinearElasticitySolver< DIM > , NonlinearElasticitySolver< DIM >
• AssembleVector() : AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
• AtBeginningOfTimestep() : AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , BidomainProblem< DIM >
• AveragedSourcePde() : AveragedSourcePde< DIM >
• AxisymmetricConductivityTensors() : AxisymmetricConductivityTensors< ELEMENT_DIM, SPACE_DIM >