BasicBidomainSolver< ELEMENT_DIM, SPACE_DIM > Class Template Reference
#include <BasicBidomainSolver.hpp>
Public Member Functions | |
| BasicBidomainSolver (bool bathSimulation, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BidomainTissue< SPACE_DIM > *pTissue, BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, 2 > *pBcc, unsigned numQuadPoints=2) | |
| virtual | ~BasicBidomainSolver () |
Protected Member Functions | |
| void | SetupLinearSystem (Vec currentSolution, bool computeMatrix) |
| virtual void | InitialiseAssembler () |
Detailed Description
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class BasicBidomainSolver< ELEMENT_DIM, SPACE_DIM >
A simple bidomain solver, which uses assembly to set up the right-hand-side (RHS) vector of the linear system to be solved. Much slower than MatrixBasedBidomainSolver, which computes the RHS with a matrix-vector product.
Definition at line 55 of file BasicBidomainSolver.hpp.
Constructor & Destructor Documentation
| BasicBidomainSolver< ELEMENT_DIM, SPACE_DIM >::BasicBidomainSolver | ( | bool | bathSimulation, | |
| AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > * | pMesh, | |||
| BidomainTissue< SPACE_DIM > * | pTissue, | |||
| BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, 2 > * | pBcc, | |||
| unsigned | numQuadPoints = 2 | |||
| ) | [inline] |
Constructor
- Parameters:
-
bathSimulation Whether the simulation involves a perfusing bath pMesh pointer to the mesh pTissue pointer to the tissue pBcc pointer to the boundary conditions numQuadPoints number of quadrature points (defaults to 2)
Definition at line 34 of file BasicBidomainSolver.cpp.
References EXCEPTION, HeartConfig::Instance(), and AbstractCardiacTissue< SPACE_DIM >::SetCacheReplication().
| virtual BasicBidomainSolver< ELEMENT_DIM, SPACE_DIM >::~BasicBidomainSolver | ( | ) | [inline, virtual] |
Destructor.
Definition at line 96 of file BasicBidomainSolver.hpp.
Member Function Documentation
| void BasicBidomainSolver< ELEMENT_DIM, SPACE_DIM >::SetupLinearSystem | ( | Vec | currentSolution, | |
| bool | computeMatrix | |||
| ) | [inline, protected, virtual] |
Implemented SetupLinearSystem() method, which uses the BidomainAssembler to assemble the LHS matrix if required, and uses the BidomainAssembler to *assemble* the RHS vector. Much slower than doing matrix-based RHS setup, which is done in MatrixBasedBidomainSolver
- Parameters:
-
currentSolution Solution at current time computeMatrix Whether to compute the matrix of the linear system
Implements AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >.
Definition at line 52 of file BasicBidomainSolver.cpp.
References BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::ApplyDirichletToLinearProblem(), LinearSystem::AssembleFinalLhsMatrix(), LinearSystem::AssembleRhsVector(), AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >::FinaliseForBath(), BasicBidomainSolver< ELEMENT_DIM, SPACE_DIM >::InitialiseAssembler(), AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >::mBathSimulation, AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >::mpBidomainAssembler, AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >::mpBoundaryConditions, AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpLinearSystem, LinearSystem::rGetLhsMatrix(), and LinearSystem::rGetRhsVector().
| void BasicBidomainSolver< ELEMENT_DIM, SPACE_DIM >::InitialiseAssembler | ( | ) | [inline, protected, virtual] |
Initialise the bidomain assembler. Can be overloaded
Definition at line 100 of file BasicBidomainSolver.cpp.
References AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >::mBathSimulation, AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >::mNumQuadPoints, AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >::mpBidomainAssembler, AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >::mpBidomainTissue, and AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpMesh.
Referenced by BasicBidomainSolver< ELEMENT_DIM, SPACE_DIM >::SetupLinearSystem().
The documentation for this class was generated from the following files:
- heart/src/solver/electrics/BasicBidomainSolver.hpp
- heart/src/solver/electrics/BasicBidomainSolver.cpp
