BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM > Class Template Reference
#include <BidomainCorrectionTermAssembler.hpp>
Public Member Functions | |
| BidomainCorrectionTermAssembler (AbstractTetrahedralMesh< ELEM_DIM, SPACE_DIM > *pMesh, BidomainTissue< SPACE_DIM > *pTissue, unsigned numQuadPoints=2) | |
Protected Member Functions | |
| c_vector< double, 2 *(ELEM_DIM+1)> | ComputeVectorTerm (c_vector< double, ELEM_DIM+1 > &rPhi, c_matrix< double, SPACE_DIM, ELEM_DIM+1 > &rGradPhi, ChastePoint< SPACE_DIM > &rX, c_vector< double, 2 > &rU, c_matrix< double, 2, SPACE_DIM > &rGradU, Element< ELEM_DIM, SPACE_DIM > *pElement) |
Protected Attributes | |
| HeartConfig * | mpConfig |
Detailed Description
template<unsigned ELEM_DIM, unsigned SPACE_DIM>
class BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >
An assembler which computes the correction term to add to the RHS vector if using state variable interpolation (SVI), as well as determining which elements should be corrected on. The formula to determine which elements SVI is used is delta Iionic > TOL, where delta Iionic is the max difference between nodal ionic values, and TOL is chosen conservatively to be 1uA/cm^2^. See wiki page ChasteGuides/StateVariableInterpolation for more details.
Definition at line 46 of file BidomainCorrectionTermAssembler.hpp.
Constructor & Destructor Documentation
| BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >::BidomainCorrectionTermAssembler | ( | AbstractTetrahedralMesh< ELEM_DIM, SPACE_DIM > * | pMesh, | |
| BidomainTissue< SPACE_DIM > * | pTissue, | |||
| unsigned | numQuadPoints = 2 | |||
| ) | [inline] |
Constructor
- Parameters:
-
pMesh pointer to the mesh pTissue pointer to the PDE numQuadPoints number of quadrature points (defaults to 2)
Definition at line 35 of file BidomainCorrectionTermAssembler.cpp.
References HeartConfig::GetUseStateVariableInterpolation(), HeartConfig::Instance(), and BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >::mpConfig.
Member Function Documentation
| c_vector< double, 2 *(ELEM_DIM+1)> BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >::ComputeVectorTerm | ( | c_vector< double, ELEM_DIM+1 > & | rPhi, | |
| c_matrix< double, SPACE_DIM, ELEM_DIM+1 > & | rGradPhi, | |||
| ChastePoint< SPACE_DIM > & | rX, | |||
| c_vector< double, 2 > & | rU, | |||
| c_matrix< double, 2, SPACE_DIM > & | rGradU, | |||
| Element< ELEM_DIM, SPACE_DIM > * | pElement | |||
| ) | [inline, protected] |
This method is called by AssembleOnElement and tells the assembler the contribution to add to the element stiffness vector.
- Parameters:
-
rPhi The basis functions, rPhi(i) = phi_i, i=1..numBases rGradPhi Basis gradients, rGradPhi(i,j) = d(phi_j)/d(X_i) rX The point in space rU The unknown as a vector, u(i) = u_i rGradU The gradient of the unknown as a matrix, rGradU(i,j) = d(u_i)/d(X_j) pElement Pointer to the element
Definition at line 46 of file BidomainCorrectionTermAssembler.cpp.
References AbstractCardiacCellInterface::GetIIonic(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), HeartConfig::GetSurfaceAreaToVolumeRatio(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, 2 >::mIionicInterp, AbstractCardiacFeObjectAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM, true, false, CARDIAC >::mpCardiacTissue, BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >::mpConfig, and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, 2 >::mStateVariablesAtQuadPoint.
Member Data Documentation
HeartConfig* BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >::mpConfig [protected] |
Local cache of the configuration singleton instance
Definition at line 51 of file BidomainCorrectionTermAssembler.hpp.
Referenced by BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >::BidomainCorrectionTermAssembler(), and BidomainCorrectionTermAssembler< ELEM_DIM, SPACE_DIM >::ComputeVectorTerm().
The documentation for this class was generated from the following files:
- heart/src/solver/electrics/BidomainCorrectionTermAssembler.hpp
- heart/src/solver/electrics/BidomainCorrectionTermAssembler.cpp
