NodesOnlyMesh< SPACE_DIM > Class Template Reference
#include <NodesOnlyMesh.hpp>
Public Member Functions | |
| void | ConstructNodesWithoutMesh (const std::vector< Node< SPACE_DIM > * > &rNodes) |
| void | ConstructNodesWithoutMesh (const TetrahedralMesh< SPACE_DIM, SPACE_DIM > &rGeneratingMesh) |
| double | GetCellRadius (unsigned index) |
| void | SetCellRadius (unsigned index, double radius) |
| void | ReMesh (NodeMap &rMap) |
| void | DeleteNode (unsigned index) |
Private Member Functions | |
| template<class Archive> | |
| void | serialize (Archive &archive, const unsigned int version) |
Private Attributes | |
| std::vector< double > | mCellRadii |
Friends | |
| class | boost::serialization::access |
Detailed Description
template<unsigned SPACE_DIM>
class NodesOnlyMesh< SPACE_DIM >
Mesh class for storing lists of nodes (no elements). This inherits from MutableMesh because we want to be able to add and delete nodes.
Definition at line 42 of file NodesOnlyMesh.hpp.
Member Function Documentation
| void NodesOnlyMesh< SPACE_DIM >::serialize | ( | Archive & | archive, | |
| const unsigned int | version | |||
| ) | [inline, private] |
Archives the member variables of the object which have to be preserved during its lifetime.
Note that we must archive any member variables FIRST so that this method can call a ReMesh (to convert from TrianglesMeshReader input format into our native format).
- Parameters:
-
archive the archive version the current version of this class
Reimplemented from MutableMesh< SPACE_DIM, SPACE_DIM >.
Definition at line 65 of file NodesOnlyMesh.hpp.
| void NodesOnlyMesh< SPACE_DIM >::ConstructNodesWithoutMesh | ( | const std::vector< Node< SPACE_DIM > * > & | rNodes | ) | [inline] |
Construct the mesh using only nodes. No mesh is created, but the nodes are stored. The original vector of nodes is deep-copied: new node objects are made with are independent of the pointers in the input so that they can be safely deleted.
If this is the only way of constructing a mesh of this type, then we can be certain that elements and boundary elements are always unused.
- Parameters:
-
rNodes a vector of pointers to nodes
Definition at line 37 of file NodesOnlyMesh.cpp.
References MutableMesh< SPACE_DIM, SPACE_DIM >::Clear(), NodesOnlyMesh< SPACE_DIM >::mCellRadii, and AbstractMesh< ELEMENT_DIM, SPACE_DIM >::mNodes.
Referenced by NodesOnlyMesh< SPACE_DIM >::ConstructNodesWithoutMesh(), and MeshBasedCellPopulation< DIM >::WriteVtkResultsToFile().
| void NodesOnlyMesh< SPACE_DIM >::ConstructNodesWithoutMesh | ( | const TetrahedralMesh< SPACE_DIM, SPACE_DIM > & | rGeneratingMesh | ) | [inline] |
A Helper method to enable you to construct a nodes-only mesh by stripping the nodes TetrahedralMesh, this calls the ConstructNodesWithoutMesh method with the nodes
If this is the only way of constructing a mesh of this type, then we can be certain that elements and boundary elements are always unused.
- Parameters:
-
rGeneratingMesh TetrahedralMesh used to generate the NodesOnlyMesh
Definition at line 53 of file NodesOnlyMesh.cpp.
References NodesOnlyMesh< SPACE_DIM >::ConstructNodesWithoutMesh(), and AbstractMesh< ELEMENT_DIM, SPACE_DIM >::mNodes.
| double NodesOnlyMesh< SPACE_DIM >::GetCellRadius | ( | unsigned | index | ) | [inline] |
Get the cell radius associated with a given node index.
- Parameters:
-
index the index of a node
Definition at line 59 of file NodesOnlyMesh.cpp.
References NodesOnlyMesh< SPACE_DIM >::mCellRadii.
| void NodesOnlyMesh< SPACE_DIM >::SetCellRadius | ( | unsigned | index, | |
| double | radius | |||
| ) | [inline] |
Set the cell radius associated with a given node index.
- Parameters:
-
index the index of a node radius the cell radius
Definition at line 65 of file NodesOnlyMesh.cpp.
References NodesOnlyMesh< SPACE_DIM >::mCellRadii.
| void NodesOnlyMesh< SPACE_DIM >::ReMesh | ( | NodeMap & | rMap | ) | [inline, virtual] |
Overridden ReMesh() method.
- Parameters:
-
rMap a reference to a nodemap which should be created with the required number of nodes.
Reimplemented from MutableMesh< SPACE_DIM, SPACE_DIM >.
Definition at line 71 of file NodesOnlyMesh.cpp.
References MutableMesh< SPACE_DIM, SPACE_DIM >::Clear(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumAllNodes(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::mBoundaryNodes, AbstractMesh< ELEMENT_DIM, SPACE_DIM >::mNodes, NodeMap::SetDeleted(), and NodeMap::SetNewIndex().
Referenced by NodeBasedCellPopulation< DIM >::Update().
| void NodesOnlyMesh< SPACE_DIM >::DeleteNode | ( | unsigned | index | ) | [inline, virtual] |
Overridden DeleteNode() method.
- Parameters:
-
index is the index of the node to be deleted
Reimplemented from MutableMesh< SPACE_DIM, SPACE_DIM >.
Definition at line 124 of file NodesOnlyMesh.cpp.
References EXCEPTION, MutableMesh< SPACE_DIM, SPACE_DIM >::mDeletedNodeIndices, and AbstractMesh< ELEMENT_DIM, SPACE_DIM >::mNodes.
Friends And Related Function Documentation
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from MutableMesh< SPACE_DIM, SPACE_DIM >.
Definition at line 52 of file NodesOnlyMesh.hpp.
Member Data Documentation
std::vector<double> NodesOnlyMesh< SPACE_DIM >::mCellRadii [private] |
Vector of cell radii.
Definition at line 49 of file NodesOnlyMesh.hpp.
Referenced by NodesOnlyMesh< SPACE_DIM >::ConstructNodesWithoutMesh(), NodesOnlyMesh< SPACE_DIM >::GetCellRadius(), NodesOnlyMesh< DIM >::serialize(), and NodesOnlyMesh< SPACE_DIM >::SetCellRadius().
The documentation for this class was generated from the following files:
- cell_based/src/mesh/NodesOnlyMesh.hpp
- cell_based/src/mesh/NodesOnlyMesh.cpp
