CellIdWriter.cpp

/*

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*/

#include "CellIdWriter.hpp"
#include "AbstractCellPopulation.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
CellIdWriter<ELEMENT_DIM, SPACE_DIM>::CellIdWriter()
    : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("loggedcell.dat")
{
    this->mVtkCellDataName = "Cell IDs";
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
double CellIdWriter<ELEMENT_DIM, SPACE_DIM>::GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    double cell_id = pCell->GetCellId();
    return cell_id;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellIdWriter<ELEMENT_DIM, SPACE_DIM>::VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    unsigned cell_id = pCell->GetCellId();
    unsigned location_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
    *this->mpOutStream << " " << cell_id << " " << location_index;

    c_vector<double, SPACE_DIM> coords = pCellPopulation->GetLocationOfCellCentre(pCell);
    for (unsigned i=0; i<SPACE_DIM; i++)
    {
        *this->mpOutStream << " " << coords[i];
    }
}

// Explicit instantiation
template class CellIdWriter<1,1>;
template class CellIdWriter<1,2>;
template class CellIdWriter<2,2>;
template class CellIdWriter<1,3>;
template class CellIdWriter<2,3>;
template class CellIdWriter<3,3>;

#include "SerializationExportWrapperForCpp.hpp"
// Declare identifier for the serializer
EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellIdWriter)