CellProliferativePhasesCountWriter.cpp

/*

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*/

#include "CellProliferativePhasesCountWriter.hpp"
#include "AbstractCellPopulation.hpp"
#include "MeshBasedCellPopulation.hpp"
#include "CaBasedCellPopulation.hpp"
#include "NodeBasedCellPopulation.hpp"
#include "PottsBasedCellPopulation.hpp"
#include "VertexBasedCellPopulation.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::CellProliferativePhasesCountWriter()
    : AbstractCellPopulationCountWriter<ELEMENT_DIM, SPACE_DIM>("cellcyclephases.dat")
{
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::VisitAnyPopulation(AbstractCellPopulation<SPACE_DIM, SPACE_DIM>* pCellPopulation)
{

    std::vector<unsigned> cell_cycle_phase_count = pCellPopulation->GetCellCyclePhaseCount();
    if (PetscTools::AmMaster())
    {
        for (unsigned i=0; i < cell_cycle_phase_count.size(); i++)
        {
            *this->mpOutStream << cell_cycle_phase_count[i] << "\t";
        }
    }
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(MeshBasedCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    std::vector<unsigned> cell_cycle_phase_count = pCellPopulation->GetCellCyclePhaseCount();

    if (PetscTools::AmMaster())
    {
        for (unsigned i=0; i < cell_cycle_phase_count.size(); i++)
        {
            *this->mpOutStream << cell_cycle_phase_count[i] << "\t";
        }
    }
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(CaBasedCellPopulation<SPACE_DIM>* pCellPopulation)
{
    VisitAnyPopulation(pCellPopulation);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(NodeBasedCellPopulation<SPACE_DIM>* pCellPopulation)
{
    VisitAnyPopulation(pCellPopulation);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(PottsBasedCellPopulation<SPACE_DIM>* pCellPopulation)
{
    VisitAnyPopulation(pCellPopulation);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellProliferativePhasesCountWriter<ELEMENT_DIM, SPACE_DIM>::Visit(VertexBasedCellPopulation<SPACE_DIM>* pCellPopulation)
{
    VisitAnyPopulation(pCellPopulation);
}

// Explicit instantiation
template class CellProliferativePhasesCountWriter<1,1>;
template class CellProliferativePhasesCountWriter<1,2>;
template class CellProliferativePhasesCountWriter<2,2>;
template class CellProliferativePhasesCountWriter<1,3>;
template class CellProliferativePhasesCountWriter<2,3>;
template class CellProliferativePhasesCountWriter<3,3>;

#include "SerializationExportWrapperForCpp.hpp"
// Declare identifier for the serializer
EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellProliferativePhasesCountWriter)