MonodomainPurkinjeSolver.hpp

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*/

#ifndef MONODOMAINPURKINJESOLVER_HPP_
#define MONODOMAINPURKINJESOLVER_HPP_

#include "AbstractDynamicLinearPdeSolver.hpp"
#include "MassMatrixAssembler.hpp"
#include "NaturalNeumannSurfaceTermAssembler.hpp"
#include "MonodomainCorrectionTermAssembler.hpp"
#include "MonodomainTissue.hpp"
#include "MonodomainPurkinjeVolumeAssembler.hpp"
#include "MonodomainPurkinjeCableAssembler.hpp"


template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class MonodomainPurkinjeSolver
  : public AbstractDynamicLinearPdeSolver<ELEMENT_DIM,SPACE_DIM,2>
{
private:
    MixedDimensionMesh<ELEMENT_DIM,SPACE_DIM>* mpMixedMesh;

    MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* mpMonodomainTissue;

    BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,2>* mpBoundaryConditions;

    MonodomainPurkinjeVolumeAssembler<ELEMENT_DIM,SPACE_DIM>* mpVolumeAssembler;
    MonodomainPurkinjeCableAssembler<ELEMENT_DIM,SPACE_DIM>* mpCableAssembler;

    NaturalNeumannSurfaceTermAssembler<ELEMENT_DIM,SPACE_DIM,2>* mpNeumannSurfaceTermsAssembler;

    // SVI and Purkinje not yet implemented:
    // MonodomainCorrectionTermAssembler<ELEMENT_DIM,SPACE_DIM>* mpMonodomainCorrectionTermAssembler;

    Mat mMassMatrix;

    Vec mVecForConstructingRhs;

    void SetupLinearSystem(Vec currentSolution, bool computeMatrix);

    void SetIdentityBlockToLhsMatrix();

public:
    void PrepareForSetupLinearSystem(Vec currentSolution);

    virtual void InitialiseForSolve(Vec initialSolution);

    MonodomainPurkinjeSolver(MixedDimensionMesh<ELEMENT_DIM,SPACE_DIM>* pMesh,
                             MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* pTissue,
                             BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,2>* pBoundaryConditions);

    virtual ~MonodomainPurkinjeSolver();
};



#endif // MONODOMAINPURKINJESOLVER_HPP_