MonodomainTissue< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <MonodomainTissue.hpp>

Inheritance diagram for MonodomainTissue< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for MonodomainTissue< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	MonodomainTissue (AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory, bool exchangeHalos=false)
	MonodomainTissue (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)
Public Member Functions inherited from AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
	AbstractCardiacTissue (AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory, bool exchangeHalos=false)
	AbstractCardiacTissue (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)
virtual	~AbstractCardiacTissue ()
bool	HasPurkinje ()
void	SetCacheReplication (bool doCacheReplication)
bool	GetDoCacheReplication ()
const c_matrix< double, SPACE_DIM, SPACE_DIM > &	rGetIntracellularConductivityTensor (unsigned elementIndex)
virtual const c_matrix< double, SPACE_DIM, SPACE_DIM > &	rGetExtracellularConductivityTensor (unsigned elementIndex)
AbstractCardiacCellInterface *	GetCardiacCell (unsigned globalIndex)
AbstractCardiacCellInterface *	GetPurkinjeCell (unsigned globalIndex)
AbstractCardiacCellInterface *	GetCardiacCellOrHaloCell (unsigned globalIndex)
virtual void	SolveCellSystems (Vec existingSolution, double time, double nextTime, bool updateVoltage=false)
ReplicatableVector &	rGetIionicCacheReplicated ()
ReplicatableVector &	rGetIntracellularStimulusCacheReplicated ()
ReplicatableVector &	rGetPurkinjeIionicCacheReplicated ()
ReplicatableVector &	rGetPurkinjeIntracellularStimulusCacheReplicated ()
void	UpdateCaches (unsigned globalIndex, unsigned localIndex, double nextTime)
void	UpdatePurkinjeCaches (unsigned globalIndex, unsigned localIndex, double nextTime)
void	ReplicateCaches ()
const std::vector< AbstractCardiacCellInterface * > &	rGetCellsDistributed () const
const std::vector< AbstractCardiacCellInterface * > &	rGetPurkinjeCellsDistributed () const
const AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *	pGetMesh () const
void	SetConductivityModifier (AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM > *pModifier)
template<class Archive >
void	SaveCardiacCells (Archive &archive, const unsigned int version) const
template<class Archive >
void	LoadCardiacCells (Archive &archive, const unsigned int version)

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	TestMonodomainTissue
class	boost::serialization::access

Additional Inherited Members
Protected Member Functions inherited from AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
void	CalculateHaloNodesFromNodeExchange ()
void	SetUpHaloCells (AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory)
Protected Attributes inherited from AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *	mpMesh
AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM > *	mpIntracellularConductivityTensors
std::vector< AbstractCardiacCellInterface * >	mCellsDistributed
std::vector< AbstractCardiacCellInterface * >	mPurkinjeCellsDistributed
ReplicatableVector	mIionicCacheReplicated
ReplicatableVector	mPurkinjeIionicCacheReplicated
ReplicatableVector	mIntracellularStimulusCacheReplicated
ReplicatableVector	mPurkinjeIntracellularStimulusCacheReplicated
HeartConfig *	mpConfig
DistributedVectorFactory *	mpDistributedVectorFactory
std::string	mFibreFilePathNoExtension
AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM > *	mpConductivityModifier
bool	mHasPurkinje
bool	mDoCacheReplication
bool	mMeshUnarchived
bool	mExchangeHalos
std::vector< unsigned >	mHaloNodes
std::vector< AbstractCardiacCellInterface * >	mHaloCellsDistributed
std::map< unsigned, unsigned >	mHaloGlobalToLocalIndexMap
std::vector< std::vector< unsigned > >	mNodesToSendPerProcess
std::vector< std::vector< unsigned > >	mNodesToReceivePerProcess

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class MonodomainTissue< ELEMENT_DIM, SPACE_DIM >

MonodomainTissue class.

Essentially identical to AbstractCardiacTissue - see documentation for AbstractCardiacTissue.

Definition at line 55 of file MonodomainTissue.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

MonodomainTissue< ELEMENT_DIM, SPACE_DIM >::MonodomainTissue	(	AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *	pCellFactory,
		bool	exchangeHalos = false
	)

Constructor

Parameters

pCellFactory	Provides the mesh and cells
exchangeHalos	used in state-variable interpolation. Defaults to false.

Definition at line 39 of file MonodomainTissue.cpp.

Referenced by MonodomainTissue< ELEMENT_DIM, SPACE_DIM >::serialize().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

MonodomainTissue< ELEMENT_DIM, SPACE_DIM >::MonodomainTissue

(

AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *

pMesh

)

Another constructor (for archiving)

Parameters

pMesh

the mesh (recovered from archive)

Definition at line 47 of file MonodomainTissue.cpp.

References EXPORT_TEMPLATE_CLASS2.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>

template<class Archive >

void MonodomainTissue< ELEMENT_DIM, SPACE_DIM >::serialize ( Archive &  archive, const unsigned int  version  )

inlineprivate

Archive the member variables.

Parameters

archive
version

Definition at line 69 of file MonodomainTissue.hpp.

References EXPORT_TEMPLATE_CLASS2, HeartConfig::Instance(), MonodomainTissue< ELEMENT_DIM, SPACE_DIM >::MonodomainTissue(), and AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >::pGetMesh().

Friends And Related Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>

friend class boost::serialization::access

friend

Needed for serialization.

Definition at line 61 of file MonodomainTissue.hpp.

---

The documentation for this class was generated from the following files:

• heart/src/tissue/MonodomainTissue.hpp
• heart/src/tissue/MonodomainTissue.cpp