ParabolicGrowingDomainPdeModifier.hpp

/*

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*/

#ifndef PARABOLICGROWINGDOMAINPDEMODIFIER_HPP_
#define PARABOLICGROWINGDOMAINPDEMODIFIER_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>

#include "AbstractGrowingDomainPdeModifier.hpp"
#include "BoundaryConditionsContainer.hpp"

template<unsigned DIM>
class ParabolicGrowingDomainPdeModifier : public AbstractGrowingDomainPdeModifier<DIM>
{
    friend class TestParabolicGrowingDomainPdeModifier;

private:

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractGrowingDomainPdeModifier<DIM> >(*this);
    }

public:

    ParabolicGrowingDomainPdeModifier(boost::shared_ptr<AbstractLinearPde<DIM,DIM> > pPde=boost::shared_ptr<AbstractLinearPde<DIM,DIM> >(),
                                      boost::shared_ptr<AbstractBoundaryCondition<DIM> > pBoundaryCondition=boost::shared_ptr<AbstractBoundaryCondition<DIM> >(),
                                      bool isNeumannBoundaryCondition=true,
                                      Vec solution=nullptr);

    virtual ~ParabolicGrowingDomainPdeModifier();

    virtual void UpdateAtEndOfTimeStep(AbstractCellPopulation<DIM,DIM>& rCellPopulation);

    virtual void SetupSolve(AbstractCellPopulation<DIM,DIM>& rCellPopulation, std::string outputDirectory);

    virtual std::shared_ptr<BoundaryConditionsContainer<DIM,DIM,1> > ConstructBoundaryConditionsContainer();

    void UpdateSolutionVector(AbstractCellPopulation<DIM,DIM>& rCellPopulation);

    void OutputSimulationModifierParameters(out_stream& rParamsFile);
};

#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(ParabolicGrowingDomainPdeModifier)

namespace boost
{
namespace serialization
{
template<class Archive, unsigned DIM>
inline void save_construct_data(
    Archive & ar, const ParabolicGrowingDomainPdeModifier<DIM> * t, const unsigned int file_version)
{
    if (t->GetSolution())
    {
        std::string archive_filename = ArchiveLocationInfo::GetArchiveDirectory() + "solution.vec";
        PetscTools::DumpPetscObject(t->GetSolution(), archive_filename);
    }
}

template<class Archive, unsigned DIM>
inline void load_construct_data(
    Archive & ar, ParabolicGrowingDomainPdeModifier<DIM> * t, const unsigned int file_version)
{
    Vec solution = nullptr;

    std::string archive_filename = ArchiveLocationInfo::GetArchiveDirectory() + "solution.vec";
    FileFinder file_finder(archive_filename, RelativeTo::Absolute);

    if (file_finder.Exists())
    {
        PetscTools::ReadPetscObject(solution, archive_filename);
    }

    ::new(t)ParabolicGrowingDomainPdeModifier<DIM>(boost::shared_ptr<AbstractLinearPde<DIM, DIM> >(),
                                                   boost::shared_ptr<AbstractBoundaryCondition<DIM> >(),
                                                   true,
                                                   solution);
}
}
} // namespace ...

#endif /*PARABOLICGROWINGDOMAINPDEMODIFIER_HPP_*/