#include <AbstractGrowingDomainPdeModifier.hpp>

Inheritance diagram for AbstractGrowingDomainPdeModifier< DIM >:

Collaboration diagram for AbstractGrowingDomainPdeModifier< DIM >:

Public Member Functions
	AbstractGrowingDomainPdeModifier (boost::shared_ptr< AbstractLinearPde< DIM, DIM > > pPde=boost::shared_ptr< AbstractLinearPde< DIM, DIM > >(), boost::shared_ptr< AbstractBoundaryCondition< DIM > > pBoundaryCondition=boost::shared_ptr< AbstractBoundaryCondition< DIM > >(), bool isNeumannBoundaryCondition=true, Vec solution=nullptr)

virtual	~AbstractGrowingDomainPdeModifier ()

void	GenerateFeMesh (AbstractCellPopulation< DIM, DIM > &rCellPopulation)

void	UpdateCellData (AbstractCellPopulation< DIM, DIM > &rCellPopulation)

void	OutputSimulationModifierParameters (out_stream &rParamsFile)

Public Member Functions inherited from AbstractPdeModifier< DIM >
	AbstractPdeModifier (boost::shared_ptr< AbstractLinearPde< DIM, DIM > > pPde=NULL, boost::shared_ptr< AbstractBoundaryCondition< DIM > > pBoundaryCondition=boost::shared_ptr< AbstractBoundaryCondition< DIM > >(), bool isNeumannBoundaryCondition=true, Vec solution=nullptr)

virtual	~AbstractPdeModifier ()

boost::shared_ptr< AbstractLinearPde< DIM, DIM > >	GetPde ()

boost::shared_ptr< AbstractBoundaryCondition< DIM > >	GetBoundaryCondition ()

bool	IsNeumannBoundaryCondition ()

void	SetDependentVariableName (const std::string &rName)

std::string &	rGetDependentVariableName ()

bool	HasAveragedSourcePde ()

void	SetUpSourceTermsForAveragedSourcePde (TetrahedralMesh< DIM, DIM > pMesh, std::map< CellPtr, unsigned > pCellPdeElementMap=nullptr)

Vec	GetSolution ()

Vec	GetSolution () const

TetrahedralMesh< DIM, DIM > *	GetFeMesh () const

virtual void	SetupSolve (AbstractCellPopulation< DIM, DIM > &rCellPopulation, std::string outputDirectory)

virtual void	UpdateAtEndOfTimeStep (AbstractCellPopulation< DIM, DIM > &rCellPopulation)=0

virtual void	UpdateAtEndOfOutputTimeStep (AbstractCellPopulation< DIM, DIM > &rCellPopulation)

virtual void	UpdateAtEndOfSolve (AbstractCellPopulation< DIM, DIM > &rCellPopulation)

bool	GetOutputGradient ()

void	SetOutputGradient (bool outputGradient)

void	SetOutputSolutionAtPdeNodes (bool outputSolutionAtPdeNodes)

void	OutputSimulationModifierParameters (out_stream &rParamsFile)

Public Member Functions inherited from AbstractCellBasedSimulationModifier< DIM, DIM >
	AbstractCellBasedSimulationModifier ()

virtual	~AbstractCellBasedSimulationModifier ()

virtual void	UpdateAtEndOfTimeStep (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)=0

virtual void	UpdateAtEndOfOutputTimeStep (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)

virtual void	SetupSolve (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation, std::string outputDirectory)=0

virtual void	UpdateAtEndOfSolve (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)

void	OutputSimulationModifierInfo (out_stream &rParamsFile)

Public Member Functions inherited from Identifiable
virtual	~Identifiable ()

std::string	GetIdentifier () const

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	TestEllipticGrowingDomainPdeModifier

class	TestParabolicGrowingDomainPdeModifier

class	boost::serialization::access

Additional Inherited Members
Protected Attributes inherited from AbstractPdeModifier< DIM >
boost::shared_ptr< AbstractLinearPde< DIM, DIM > >	mpPde

boost::shared_ptr< AbstractBoundaryCondition< DIM > >	mpBoundaryCondition

bool	mIsNeumannBoundaryCondition

std::string	mDependentVariableName

Vec	mSolution

TetrahedralMesh< DIM, DIM > *	mpFeMesh

std::string	mOutputDirectory

bool	mOutputGradient

bool	mOutputSolutionAtPdeNodes

out_stream	mpVizPdeSolutionResultsFile

bool	mDeleteFeMesh

Detailed Description

template<unsigned DIM>
class AbstractGrowingDomainPdeModifier< DIM >

An abstract modifier class containing functionality common to EllipticGrowingDomainPdeModifier and ParabolicGrowingDomainPdeModifier, which both solve a linear elliptic or parabolic PDE coupled to a cell-based simulation on an evolving domain defined by the cell population.

Definition at line 50 of file AbstractGrowingDomainPdeModifier.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

AbstractGrowingDomainPdeModifier< DIM >::AbstractGrowingDomainPdeModifier	(	boost::shared_ptr< AbstractLinearPde< DIM, DIM > >	pPde = `boost::shared_ptr<AbstractLinearPde<DIM,DIM> >()`,
		boost::shared_ptr< AbstractBoundaryCondition< DIM > >	pBoundaryCondition = `boost::shared_ptr<AbstractBoundaryCondition<DIM> >()`,
		bool	isNeumannBoundaryCondition = `true`,
		Vec	solution = `nullptr`
	)

Constructor.

Parameters

pPde	A shared pointer to a linear PDE object (defaults to NULL)
pBoundaryCondition	A shared pointer to an abstract boundary condition (defaults to NULL, corresponding to a constant boundary condition with value zero)
isNeumannBoundaryCondition	Whether the boundary condition is Neumann (defaults to true)
solution	solution vector (defaults to NULL)

Definition at line 45 of file AbstractGrowingDomainPdeModifier.cpp.

Referenced by AbstractGrowingDomainPdeModifier< DIM >::serialize().

template<unsigned DIM>

AbstractGrowingDomainPdeModifier< DIM >::~AbstractGrowingDomainPdeModifier ( )

virtual

Destructor.

Definition at line 57 of file AbstractGrowingDomainPdeModifier.cpp.

Referenced by AbstractGrowingDomainPdeModifier< DIM >::serialize().