Chaste  Release::2017.1
Public Member Functions | Protected Attributes | Private Member Functions | Friends | List of all members
AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM > Class Template Referenceabstract

#include <AbstractCellPopulationBoundaryCondition.hpp>

+ Inheritance diagram for AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >:
+ Collaboration diagram for AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions

 AbstractCellPopulationBoundaryCondition (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
 
virtual ~AbstractCellPopulationBoundaryCondition ()
 
virtual void ImposeBoundaryCondition (const std::map< Node< SPACE_DIM > *, c_vector< double, SPACE_DIM > > &rOldLocations)=0
 
virtual bool VerifyBoundaryCondition ()=0
 
const AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > * GetCellPopulation () const
 
void OutputCellPopulationBoundaryConditionInfo (out_stream &rParamsFile)
 
virtual void OutputCellPopulationBoundaryConditionParameters (out_stream &rParamsFile)=0
 
- Public Member Functions inherited from Identifiable
virtual ~Identifiable ()
 
std::string GetIdentifier () const
 

Protected Attributes

AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > * mpCellPopulation
 

Private Member Functions

template<class Archive >
void serialize (Archive &archive, const unsigned int version)
 

Friends

class TestCellPopulationBoundaryConditions
 
class boost::serialization::access
 

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >

An abstract cell population boundary condition class, for use in cell-based simulations.

Definition at line 48 of file AbstractCellPopulationBoundaryCondition.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::AbstractCellPopulationBoundaryCondition ( AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *  pCellPopulation)

Constructor.

Parameters
pCellPopulationpointer to the cell population.

Definition at line 39 of file AbstractCellPopulationBoundaryCondition.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::~AbstractCellPopulationBoundaryCondition ( )
virtual

Destructor.

Definition at line 45 of file AbstractCellPopulationBoundaryCondition.cpp.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
const AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > * AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::GetCellPopulation ( ) const

Get a pointer to the cell population.

Returns
A const pointer to the mpCellPopulation

Definition at line 50 of file AbstractCellPopulationBoundaryCondition.cpp.

References AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::mpCellPopulation.

Referenced by PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::serialize().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
virtual void AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::ImposeBoundaryCondition ( const std::map< Node< SPACE_DIM > *, c_vector< double, SPACE_DIM > > &  rOldLocations)
pure virtual

Impose the boundary condition on each node.

As this method is pure virtual, it must be overridden in subclasses.

Parameters
rOldLocationsthe node locations prior to being updated in UpdateNodePositions()

Implemented in PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::OutputCellPopulationBoundaryConditionInfo ( out_stream &  rParamsFile)

Output cell population boundary condition used in the simulation to file and then call OutputCellPopulationBoundaryConditionParameters() to output all relevant parameters.

Parameters
rParamsFilethe file stream to which the parameters are output

Definition at line 56 of file AbstractCellPopulationBoundaryCondition.cpp.

References Identifiable::GetIdentifier(), and AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::OutputCellPopulationBoundaryConditionParameters().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::OutputCellPopulationBoundaryConditionParameters ( out_stream &  rParamsFile)
pure virtual

Output cell population boundary condition parameters to file.

As this method is pure virtual, it must be overridden in subclasses.

Parameters
rParamsFilethe file stream to which the parameters are output

Implemented in PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >, SphereGeometryBoundaryCondition< DIM >, and CryptSimulationBoundaryCondition< DIM >.

Definition at line 66 of file AbstractCellPopulationBoundaryCondition.cpp.

Referenced by AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::OutputCellPopulationBoundaryConditionInfo(), CryptSimulationBoundaryCondition< DIM >::OutputCellPopulationBoundaryConditionParameters(), SphereGeometryBoundaryCondition< DIM >::OutputCellPopulationBoundaryConditionParameters(), and PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::OutputCellPopulationBoundaryConditionParameters().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
template<class Archive >
void AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::serialize ( Archive &  archive,
const unsigned int  version 
)
inlineprivate

Serialize the object and its member variables.

Parameters
archivethe archive
versionthe current version of this class

Definition at line 62 of file AbstractCellPopulationBoundaryCondition.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
virtual bool AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::VerifyBoundaryCondition ( )
pure virtual

Pure method which should verify the boundary condition has been applied. This is called after ImposeBoundaryCondition() to ensure the condition is still satisfied.

As this method is pure virtual, it must be overridden in subclasses.

Returns
whether the boundary condition is satisfied.

Implemented in PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >, SphereGeometryBoundaryCondition< DIM >, and CryptSimulationBoundaryCondition< DIM >.

Friends And Related Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
friend class boost::serialization::access
friend

Needed for serialization.

Definition at line 54 of file AbstractCellPopulationBoundaryCondition.hpp.

Member Data Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
AbstractCellPopulation<ELEMENT_DIM,SPACE_DIM>* AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::mpCellPopulation
protected

The cell population.

Definition at line 70 of file AbstractCellPopulationBoundaryCondition.hpp.

Referenced by AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::GetCellPopulation(), PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::ImposeBoundaryCondition(), and PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >::VerifyBoundaryCondition().

The documentation for this class was generated from the following files: